Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11201g00001 ATGGACGATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGTGGTTGATGCAACAACATCAGCATCAGCATCCTTCCATGAAGCAGATTATGGCAATCATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCATTTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCAGAACGAAATAATGCACTTATGGAAAGAGATAATGCAATCGCAACCCTTCAGTTTCGAGAAAATGCTTTGGCCAATGGCGGTATGTCATCATGCCCTCCAGGATGTCAAATCTCACGGGGAGTTAAGCATATACATCATCTGCCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNGACACGCGAATTGCACACAACCAATGCCCTCCCAGAAGCACCCATTCCTTCAGAGGTTGGGAAACCACCTAGGCGGGCCAAACGACCGAAGGAAAATAAGTCTGTTTCACCCAACAAGAAGACTCCAAAAACTACTAGAAAGGTCAAAAAAGAGGGTGAGGATTTAAACAAGACAATGTTTGCCAATGACGAAGCACTTGAATGGAAGAGTAGTCAAGAAATTATAAACGGAGGTGATGATCTTAACAAGCAGTTACCGGTCTCAAAGGCTGATTGGAAACCTCAGGACTTGGCATTGAACCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGTGTGCTCTTGTACTGGTGTTCTGAGACAGTGCTACAAATGGGGCAATGGAGGTTGGCAATCTGCTTGTTGTACAACCACTTTATCGGTGTATCCGCTTCCAGCAGTGCCCAACAAAAGACATGCTCGAGTAGGTGGTAGAAAAATGAGTGGAAGTGCTTTCAATAAACTGCTTAGCCGGCTAGCAGCTGAAGGGCATGATCTCTCACACCCGGTTGACCTTAAAGACCATTGGGCCAAACATGGTACAAATCGATATATCACAATAAAGTAG 1032 0.4302 MDDRENGRHKADQYKSAQGQWLMQQHQHQHPSMKQIMAIMAERDAAIQERNLAISEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPXXXXXXXXXXXXXXXXXTRELHTTNALPEAPIPSEVGKPPRRAKRPKENKSVSPNKKTPKTTRKVKKEGEDLNKTMFANDEALEWKSSQEIINGGDDLNKQLPVSKADWKPQDLALNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11201g00001 343 MobiDBLite consensus disorder prediction 137 196 - -
Trme11201g00001 343 SMART GAGA_bind_2 1 343 IPR010409 -
Trme11201g00001 343 PANTHER - 1 343 IPR010409 -
Trme11201g00001 343 MobiDBLite consensus disorder prediction 162 178 - -
Trme11201g00001 343 MobiDBLite consensus disorder prediction 1 32 - -
Trme11201g00001 343 MobiDBLite consensus disorder prediction 17 32 - -
Trme11201g00001 343 Pfam GAGA binding protein-like family 1 343 IPR010409 -
Trme11201g00001 343 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11201g00001 Trme-Chr11201 353 1510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11201g00001 66 343 BBR or BPC Transcription factor family AT5G42520 60.959 8.17e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Trme11201g00001 GAGA_bind 2.6e-105 No_clan