Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11199g00001 CCTTTTGGCATTGGGAGGTGGGAAATCCTTTCAGACAGGGATTTTGATTTTAGGGAGGAATCTGGTGAAACCTTGTTCTCAAGAATAGGTGAGGTGACTGTCATTTTCCCAAGCTTAAAATCGTTAGCAGATCAATTGCGTCCTAAATTAGTTGGTACTCTAAATTATATGTCACCAGAGGCATTTATGTGCAATGAGAGTGATGCGAATGGGAACATCATAAAGTGTGGTCGGCCATCCGATATCTGGTCCTTAGGCTGCATCCTTTATCAAATGGTATATGGAAGAACACCTTTTTCAGATTACAAGACATTTTGGGCCAAAGTCAAGGTCATAACTGATCCAAATCATCAAATTACGTATGAACCAGTTTCGAACCCATGGCTTGTCGATCTTATGAAGAAGTGTCTTGCATGGGATCGCAATGAAAGATGGAGAATTCCTCAGTTACTCCAACATCCTTTTCTTGCTCCTCCAGTTTCATGTCATCCTTGTTTGTCCCAAGACAATACCTTTAAATGGCTGCAACTTATTGCTGAAACCTGTACATGTGACCAAGAAGCATTGCAGCTTTGTTATCAGCTGCAACAGGTGCTTGGTGACCCCTTTAAGTTGATAACTCCTGACACAACGAATTCGCGAGACGGACAGCGTAAATTGCTGTCCCGCATATCAGAACTCTGTGTTCACCTGCATGAAAGATTAACAATTTCTGATAACAAATAA 726 0.4146 PFGIGRWEILSDRDFDFREESGETLFSRIGEVTVIFPSLKSLADQLRPKLVGTLNYMSPEAFMCNESDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKVKVITDPNHQITYEPVSNPWLVDLMKKCLAWDRNERWRIPQLLQHPFLAPPVSCHPCLSQDNTFKWLQLIAETCTCDQEALQLCYQLQQVLGDPFKLITPDTTNSRDGQRKLLSRISELCVHLHERLTISDNK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11199g00001 241 ProSiteProfiles Protein kinase domain profile. 1 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11199g00001 241 SMART serkin_6 7 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11199g00001 241 Pfam Protein kinase domain 49 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11199g00001 241 SUPERFAMILY Protein kinase-like (PK-like) 47 169 IPR011009 -
Trme11199g00001 241 Gene3D Transferase(Phosphotransferase) domain 1 19 161 - -
Trme11199g00001 241 PANTHER MIXED LINEAGE PROTEIN KINASE 48 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11199g00001 Trme-Chr11199 66 1344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11199g00001 25 166 MAP Kinase Kinase Kinase AT2G32510 32.026 3.41e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Trme11199g00001 Pkinase 6.9e-18 CL0016