Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme111957g00001 GCTGAGACTGGGAAACCGCAAGGAGTGGCAGTTCGAAACTCCGGCGATGATGAACCTGGTGGAAAATTTGCTTCTAAAAGAAACTCCGGTAGAGCTTCCGGTGACTCTTCCGACGGAGGTGATGCACGTGGGGGGATACCGAGAGTTTCGGAGGATTTGAAAGATGCTTTATCGGCTTTTCAACAAACTTTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCAAGTGCGGGTTTCTTCAAAATGACGGGTTATACTTCAAAAGAAGTCATAGGAAGAAACTGCCCTCTCCTGATCGCACTTGCGGTGGATCGAACCGTGGTCCTTCCTACCAAGTTCAGCGGCAATCACTACTAA 369 0.4851 AETGKPQGVAVRNSGDDEPGGKFASKRNSGRASGDSSDGGDARGGIPRVSEDLKDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCPLLIALAVDRTVVLPTKFSGNHY 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme111957g00001 122 Gene3D PAS domain 45 115 - -
Trme111957g00001 122 CDD PAS 76 103 IPR000014 -
Trme111957g00001 122 ProSiteProfiles PAS repeat profile. 49 98 IPR000014 -
Trme111957g00001 122 SUPERFAMILY PYP-like sensor domain (PAS domain) 70 106 IPR035965 -
Trme111957g00001 122 PANTHER PROTEIN TWIN LOV 1 42 112 - -
Trme111957g00001 122 MobiDBLite consensus disorder prediction 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme111957g00001 Trme-Chr111957 1 507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme111957g00001 41 112 AGC Kinase Gene Family AT3G45780 37.500 3.42e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme111957g00001 K20715 - gmx:100804524 145.976