Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme111886g00001 ATGTCCATTACAACAGGTGAAACATTTACTGACGTGGTTGGGAGCCCATACTATGTAGCCCCTGAAGTTTTGCGGAAGAACTATGGTCAAGAATGTGATGTTTGGAGTGCTGGGGTGATCATTTATATTTTACTCAGTGGAGTTCCTCCATTTTGGGATGGTGAGAATGCTATGTCACTTGTTTTT 186 0.4194 MSITTGETFTDVVGSPYYVAPEVLRKNYGQECDVWSAGVIIYILLSGVPPFWDGENAMSLVF 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme111886g00001 62 Gene3D Transferase(Phosphotransferase) domain 1 1 62 - -
Trme111886g00001 62 ProSiteProfiles Protein kinase domain profile. 1 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme111886g00001 62 SUPERFAMILY Protein kinase-like (PK-like) 3 58 IPR011009 -
Trme111886g00001 62 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 55 - -
Trme111886g00001 62 Pfam Protein kinase domain 4 55 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme111886g00001 Trme-Chr111886 1 186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme111886g00001 6 53 EF-hand Containing Proteins AT2G38910 93.750 2.39e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme111886g00001 Pkinase 1.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme111886g00001 K13412 - ming:122081142 104.76