Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme111860g00001 TACCACCTAAAAGATGCTGTCCTTGATGGAGGCATTCCATTCAACAAGGCTTATGGAATGACAGCCTTTGAATACCATGGAACAGATCCAAGGTTTAACAAAGTTTTCAACAAGGGAATGTCTGATCATTCTACCATCACAATGAAGAAAATTCTTGAAACCTACACAGGTTTTGAAGGCCTTAAATCTCTTGTTGATGTTGGTGGTGGAACTGGAGCTGTAATCAACACCATTGTCTCTAAGTATCCCACTATTAAAGGCATTAATTTTGATTTACCCCATGTTATTGAAGATGCTCCTTCTTATCCAGGTATTTTTTTCTACTCTTAA 330 0.3758 YHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGIFFYS 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme111860g00001 109 Pfam O-methyltransferase domain 1 102 IPR001077 GO:0008171
Trme111860g00001 109 PANTHER O-METHYLTRANSFERASE 4 99 IPR016461 GO:0008168
Trme111860g00001 109 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 109 IPR016461 GO:0008168
Trme111860g00001 109 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 107 IPR029063 -
Trme111860g00001 109 Gene3D Vaccinia Virus protein VP39 1 109 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme111860g00001 Trme-Chr111860 105 434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme111860g00001 1 105 Monolignol Biosynthesis Gene Families AT5G54160 86.667 4.28e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme111860g00001 K13066 - qsa:O6P43_020016 212.231