Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme111804g00001 GTAAGACAGCGGCCGTGGGGAAAATGGGCTGCTGAGATCCGTGACCCGATCCGCCGGAAACGTCTCTGGCTTGGAACATTCAAAACGGCGGAGGAAGCTGCCGCTGAGTACGACAGAGTGGCCGTGATGCTGAAAGGTCCTAACGCCGTTACCAACTTTCCGGTAACTACAACGGAAGCAGAAACGGAAGTACCGCCGCCGGAAAATAACTCCGGTGGGATTAACGGCGGTGCTTGTTACTCCGACGTTTTGGCTTCTCCGACGTCTGTTTTAACTTACTGTGACTCGACTCCGTTTGACGGTTTCCGTTACGGTGATGTGGATGCTTTTGGGTTTAACATCGACGCACCGTTAAGTTTGCCGGAAGTTAACGTTACGCTGACGTGTCATCAGAAATTGGAAAAAGAAGAAGCGTTTGAAGAGTTTGATCTTGATGAGTTTATGACGTGGCCGTACTGA 459 0.5098 VRQRPWGKWAAEIRDPIRRKRLWLGTFKTAEEAAAEYDRVAVMLKGPNAVTNFPVTTTEAETEVPPPENNSGGINGGACYSDVLASPTSVLTYCDSTPFDGFRYGDVDAFGFNIDAPLSLPEVNVTLTCHQKLEKEEAFEEFDLDEFMTWPY 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme111804g00001 152 CDD AP2 1 56 IPR001471 GO:0003700|GO:0006355
Trme111804g00001 152 Gene3D AP2/ERF domain 1 56 IPR036955 GO:0003700|GO:0006355
Trme111804g00001 152 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 93 - -
Trme111804g00001 152 ProSiteProfiles AP2/ERF domain profile. 1 54 IPR001471 GO:0003700|GO:0006355
Trme111804g00001 152 FunFam Ethylene-responsive transcription factor 2 1 55 - -
Trme111804g00001 152 SUPERFAMILY DNA-binding domain 1 55 IPR016177 GO:0003677
Trme111804g00001 152 SMART rav1_2 1 60 IPR001471 GO:0003700|GO:0006355
Trme111804g00001 152 Pfam AP2 domain 1 46 IPR001471 GO:0003700|GO:0006355
Trme111804g00001 152 PIRSF PTI6 1 152 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme111804g00001 Trme-Chr111804 193 651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme111804g00001 1 102 AP2-EREBP Transcription Factor Family AT4G27950 53.704 1.78e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme111804g00001 AP2 5.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme111804g00001 K13434 - gmx:100800489 226.483