Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme111795g00001 TACATGCCAAATGGTACTTTGTATGATTCACTTCACAAGGGTTGGATTCATTTGGATTGGCCTACAAGGTATAGGATTGCACTTGGAATTGCTCAAGGTCTTGCATACCTTCACCATGATTTGGTTTTTCCTATTATCCATAGAGATATTAAGTCAACCAATATTCTCTTGGATGAAGATTACCATCCTAAGGTTGCTGATTTTGGGATTGCTAAGGTTTTACAAGCAAGAGGAGGAAAGGATTCCACAACCACTGTTATTGCAGGAACATATGGTTACTTAGCCCCAGGTAAATAA 297 0.3872 YMPNGTLYDSLHKGWIHLDWPTRYRIALGIAQGLAYLHHDLVFPIIHRDIKSTNILLDEDYHPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPGK 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme111795g00001 98 Gene3D Transferase(Phosphotransferase) domain 1 1 97 - -
Trme111795g00001 98 FunFam Protein kinase superfamily protein 2 73 - -
Trme111795g00001 98 SUPERFAMILY Protein kinase-like (PK-like) 1 96 IPR011009 -
Trme111795g00001 98 ProSiteProfiles Protein kinase domain profile. 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme111795g00001 98 Pfam Protein kinase domain 1 96 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme111795g00001 98 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 96 - -
Trme111795g00001 98 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme111795g00001 Trme-Chr111795 61 357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme111795g00001 1 96 Receptor kinase-like Gene Family AT5G49660 81.250 9.06e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme111795g00001 Pkinase 1.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme111795g00001 - - lja:Lj1g3v2096140.1 190.274