Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme111748g00001 AACCATATTTTGTTTTGCAGCACTTCTGGCTGCCCCTTTGGTGAGAGCTGCCACTTCTTGCACCATGTTCCTGGTGGTTATAATGCTGCTGCCCAGATGATGAATCTAACACCTGCAGCACCTCCTGCACCCAGAAATGTTGCACCCCCACCACATGTANCCAATGGGTCCGCGCCATCTGCTGTTAAAAGCCGCATATGTAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTCGCCCACGGTGAATGGGAACTTGGGAAGGCTGTTGCTCTGTCATTTGATGATCACCGTGGCATGGGACCACCCAACGTAGGTCGTTTTGGTGGCCATCGGATGGAGCCCCCTCCTGGTCCAACTACCAGCTTTGGTGCCAATGCCACTGCCAAGATCAGTGTAGAAGCTTCTCTGGCTGGAGCAATCATTGGTAAGGGTGGTGTGAACTCAAAACAGATCTGTCGCCAAACTGGAGCCAAACTCTCAATTCGAGAGCATGAAGCTGATCCAAATCTTAGGAACATTGAACTTGAGGGAACTTTTGAACAAATTAAGGATGCAAGTAACATGGTGAAGGATTTACTGTTGACCCTGCAAATGTCTGCACCACCTAAAACATCCCAAGGAGGAGGAGGAGG 650 0.4892 NHILFCSTSGCPFGESCHFLHHVPGGYNAAAQMMNLTPAAPPAPRNVAPPPHVXNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKAVALSFDDHRGMGPPNVGRFGGHRMEPPPGPTTSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHEADPNLRNIELEGTFEQIKDASNMVKDLLLTLQMSAPPKTSQGGGGG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme111748g00001 217 Pfam KH domain 134 196 IPR004088 GO:0003723
Trme111748g00001 217 SMART c3hfinal6 2 23 IPR000571 GO:0046872
Trme111748g00001 217 SMART c3hfinal6 63 88 IPR000571 GO:0046872
Trme111748g00001 217 Gene3D K Homology domain, type 1 127 217 IPR036612 GO:0003723
Trme111748g00001 217 ProSiteProfiles Zinc finger C3H1-type profile. 61 89 IPR000571 GO:0046872
Trme111748g00001 217 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Trme111748g00001 217 Gene3D - 56 94 - -
Trme111748g00001 217 FunFam Zinc finger CCCH domain-containing protein 56 93 - -
Trme111748g00001 217 SUPERFAMILY CCCH zinc finger 60 92 IPR036855 GO:0046872
Trme111748g00001 217 ProSiteProfiles Type-1 KH domain profile. 131 195 - -
Trme111748g00001 217 SMART kh_6 130 200 IPR004087 GO:0003676
Trme111748g00001 217 CDD KH-I_AtC3H36_like 134 199 - -
Trme111748g00001 217 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 88 IPR000571 GO:0046872
Trme111748g00001 217 PANTHER CCCH ZINC FINGER/TIS11-RELATED 5 140 IPR045877 GO:0003729
Trme111748g00001 217 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 121 203 IPR036612 GO:0003723
Trme111748g00001 217 MobiDBLite consensus disorder prediction 107 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme111748g00001 Trme-Chr111748 2 651 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme111748g00001 KH_1 6.2e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme111748g00001 - - gmx:100803981 355.525