Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme111696g00001 GACTTCACCGCACATGATCCTTCCCCAGAAGCGCGTTTGTTAGAAGCACTTTCCCTAATGCTTGATCCACCCATCCGTCGCTTTAACACTGAAACCCAAACACGACGCCCACGTCGTGGGCGTCCCACACAACAAGTTCCCGTGCACCGTCACACAGGAGATCATCACCATCCTACCCAAACACAACCCGAACCCGAACCCGGTATCCAACACCGTCCACGTACATGGGTAATTCTTCAACCAATTGATCCATCAAATTCAAACACGTTTCAACCGGTGATTAATACACGTGGACGACAAGGACCGATTCCACGTGGCGTTGATTCTAGAGATTACTTTTTCGGTCCGGGATTTAACGAACTAATAGATCAGATAACAGAAAACGACCGGCAAGGACCACCGCCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANGTGAAAATCGAAAGCAAAAATCTGAAAGAGAATTCGCATTGTCCTGTTTGTCAAGAAGAGTTTGAAATTGGCGGTGAAGCGAGGGAACTTCCATATTACTGTTTCTTCTGA 549 0.4463 DFTAHDPSPEARLLEALSLMLDPPIRRFNTETQTRRPRRGRPTQQVPVHRHTGDHHHPTQTQPEPEPGIQHRPRTWVILQPIDPSNSNTFQPVINTRGRQGPIPRGVDSRDYFFGPGFNELIDQITENDRQGPPPXXXXXXXXXXXVKIESKNLKENSHCPVCQEEFEIGGEARELPYYCFF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme111696g00001 182 Coils Coil 147 157 - -
Trme111696g00001 182 MobiDBLite consensus disorder prediction 24 110 - -
Trme111696g00001 182 MobiDBLite consensus disorder prediction 80 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme111696g00001 Trme-Chr111696 3 628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme111696g00001 104 177 C3H Transcription Factor Family AT5G01980 30.263 5.77e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme111696g00001 K11982 - gmx:100787399 199.904