Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trme111572g00001 ATGATATTTATTGATGAAATAGATGCAATTGCCCCTCCAAGGAAAGATGGGGTTGAAGAGCTATCTAAAAGATTGGTTGGAACCTTATTGAAGCTGATGGATGGAATTAGTATAAATGGAGGATTAGTTGTAATTGCTGCTACTAATAGGCCTGACCATGTTGATCCAGCTCTCAGACGACGTGGAAAATTTGACCAGGATATTGAAATTG 211 0.3839 MIFIDEIDAIAPPRKDGVEELSKRLVGTLLKLMDGISINGGLVVIAATNRPDHVDPALRRRGKFDQDIEI 70
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trme111572g00001 70 ProSitePatterns AAA-protein family signature. 42 61 IPR003960 GO:0005524|GO:0016887
Trme111572g00001 70 Gene3D - 1 70 IPR027417 -
Trme111572g00001 70 PANTHER AAA DOMAIN-CONTAINING 2 65 IPR045199 -
Trme111572g00001 70 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 70 IPR027417 -
Trme111572g00001 70 Pfam ATPase family associated with various cellular activities (AAA) 2 70 IPR003959 GO:0005524|GO:0016887
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trme111572g00001 Trme-Chr111572 60 405 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme111572g00001 1 70 Calmodulin-binding Proteins AT3G56690 67.143 1.18e-27 101
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme111572g00001 - - lja:Lj1g3v4093240.1 106.686