Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme111509g00001 ATGGATTGGACTACTCGTGTTACGATTGCAATAGGAGCAGCAAGGGGCTTGGAGTATCTCCATGAAGCAGCTGCTCCAAGGATTCTTCATAGAGATGTGAAATCAACCAACATTCTTCTGGACAAAAATTGGCAAGCAAAA 141 0.4326 MDWTTRVTIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAK 47
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme111509g00001 47 ProSiteProfiles Protein kinase domain profile. 1 47 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme111509g00001 47 ProSitePatterns Serine/Threonine protein kinases active-site signature. 28 40 IPR008271 GO:0004672|GO:0006468
Trme111509g00001 47 Pfam Protein tyrosine and serine/threonine kinase 4 46 IPR001245 GO:0004672|GO:0006468
Trme111509g00001 47 SUPERFAMILY Protein kinase-like (PK-like) 1 47 IPR011009 -
Trme111509g00001 47 Gene3D Transferase(Phosphotransferase) domain 1 1 47 - -
Trme111509g00001 47 PANTHER OS01G0750732 PROTEIN 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme111509g00001 Trme-Chr111509 234 374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme111509g00001 1 47 Receptor kinase-like Gene Family AT2G28250 80.851 3.69e-24 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Trme111509g00001 PK_Tyr_Ser-Thr 5.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme111509g00001 - - gmx:100499641 96.6709