Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11126g00001 ATGTCCATCCATTACATGTACAAGATTCGGGTATTAAAGTATAAAAGGCTAACAGAAACTGGGAACTTTGGAGGGCTGGATGAAGATTTGGCTTTGAGAAGGTTTACATACAATGAGCTGAGAAGAGCAACAAATCATTTCAAGGAAGAGTTGGGTAAGGGCGCTTTTGGAAAAGTTTACAAAGGAGCCTTAARCAAGGGAAAGAGATTGATTGCAGTGAAGAGACTRGAGAAGTTAGTGGAAGAAGGAGAGAGGGAGTTTCAAGCAGAAGTGAGAGCCATTGGGAAAACACACCACAGGAACCTAGTTAGATTGCTTGGTTTTTGTGCTGAGGGTTCTAAAAGGCTTCTGGTTTATGAATACATGAGCAATGGTTCGCTTGGAAAACTTCTGTTTGGTGATCAAAGACGTCCGGATTGGGATGAGAGAGTAAGAATAGCACTGGACATTGCTAGAGGGATCTTGTATCTCCATGAAGAGTGTGAGGCACCAATCATTCATTGTGACATAAAGCCTCAAAATATTTTGATGGATGAGTTTTGGACTGCCAAGATATCTGATTTTGGTCTTGCAAAACTTCTAATGCCGGACCAAACAAGAACCTTCACGGTGGTTAGAGGGACAAGAGGCTACATGGCTCCGGAATGGAACAAGAACGTGCCAATATCACTGAAGGCAGATGTTTATAGCTATGGTATAATGCTATTGGAAATCTTATGTTGCAGAAGAAACCTCGATGTTAATGTGTTGGAACCTGAGGAGATTCTTCTCTCTGGTTGGGCTTATAAGTGCTTTGTTGCAGGAGAGGTAAATAAGCTTGTTCCTTGGGAAGTCATTGATAAAAATGTCATGGAAAATATGGTTAAGGTAGCACTTTGGTCTATTCAAGATGACCCTTTTTTCAGGCCAACAATGAAGGGTGTGATGTTGATGTTAGAAGGAGTTACTGATATAGCAATTCCTCCTTGTCCTGTTTCCAATTCTGCATGA 990 0.4111 MSIHYMYKIRVLKYKRLTETGNFGGLDEDLALRRFTYNELRRATNHFKEELGKGAFGKVYKGALXKGKRLIAVKRLEKLVEEGEREFQAEVRAIGKTHHRNLVRLLGFCAEGSKRLLVYEYMSNGSLGKLLFGDQRRPDWDERVRIALDIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTVVRGTRGYMAPEWNKNVPISLKADVYSYGIMLLEILCCRRNLDVNVLEPEEILLSGWAYKCFVAGEVNKLVPWEVIDKNVMENMVKVALWSIQDDPFFRPTMKGVMLMLEGVTDIAIPPCPVSNSA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11126g00001 329 Gene3D Phosphorylase Kinase; domain 1 13 121 - -
Trme11126g00001 329 FunFam S-receptor-like serine/threonine-protein kinase 15 121 - -
Trme11126g00001 329 Coils Coil 73 93 - -
Trme11126g00001 329 PIRSF ILK 36 319 - -
Trme11126g00001 329 ProSiteProfiles Protein kinase domain profile. 45 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11126g00001 329 Pfam Protein kinase domain 47 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11126g00001 329 Gene3D Transferase(Phosphotransferase) domain 1 122 320 - -
Trme11126g00001 329 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 31 324 - -
Trme11126g00001 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Trme11126g00001 329 SMART serkin_6 45 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11126g00001 329 SUPERFAMILY Protein kinase-like (PK-like) 31 313 IPR011009 -
Trme11126g00001 329 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 122 320 - -
Trme11126g00001 329 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11126g00001 Trme-Chr11126 555 1544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11126g00001 32 314 Receptor kinase-like Gene Family AT1G60800 44.178 3.74e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme11126g00001 Pkinase 9.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11126g00001 - - ahf:114924106 549.28