Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme111198g00001 ATGGACCAGTATGAGAAGGTTGAGAAGATTGGTGAAGGTACATACGGTGTCGTTTACAAGGCTCGTGACCGTGTAACCAATGAAACTATTGCGCTTAAGAAGATTCGTCTTGAGCAGGAAGATGAAGGTGTTCCTAGCACCGCTATTCGTGAGATTTCTCTTCTTAAAGAAATGCAGCATAGGAACATCGTTAGTTTGACTTTGATGTGTAGTGTAATGTTGGATGGTTTGGATCTGCAAGAGTAA 246 0.4187 MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVSLTLMCSVMLDGLDLQE 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme111198g00001 81 FunFam Cell division related protein kinase 2 1 76 - -
Trme111198g00001 81 Pfam Protein kinase domain 4 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme111198g00001 81 SUPERFAMILY Protein kinase-like (PK-like) 1 69 IPR011009 -
Trme111198g00001 81 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Trme111198g00001 81 PANTHER CELL DIVISION PROTEIN KINASE 1 68 - -
Trme111198g00001 81 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trme111198g00001 81 ProSiteProfiles Protein kinase domain profile. 4 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme111198g00001 Trme-Chr111198 72 628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme111198g00001 1 66 Core Cell Cycle Gene Families AT3G48750 95.455 3.11e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Trme111198g00001 Pkinase 5.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme111198g00001 K02206 - gmx:100782865 127.102