Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme111185g00001 ATGGCACTTGGGACAGCTAGAGCCTTAGAGTATTTGCATGAGCAATGTCAACCGCCAGTGGTACACAGAAATTTGAAGTCTGCCAATGTTCTCCTTGATGATGATCTATCTGTGCGTGTATCTGATTGTGGTTTAGCTCCATTGATAGCTTCAGGGTCTGTAACTCAGCTCTCGGGGAACCTGCAATCAGCTTATGGTTATGGAGCTCCAGAATTTGAATCGGGAACTTACACTTACCAAAGCGAT 246 0.4512 MALGTARALEYLHEQCQPPVVHRNLKSANVLLDDDLSVRVSDCGLAPLIASGSVTQLSGNLQSAYGYGAPEFESGTYTYQSD 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme111185g00001 82 Pfam Protein tyrosine and serine/threonine kinase 1 82 IPR001245 GO:0004672|GO:0006468
Trme111185g00001 82 Gene3D Transferase(Phosphotransferase) domain 1 1 82 - -
Trme111185g00001 82 SUPERFAMILY Protein kinase-like (PK-like) 1 82 IPR011009 -
Trme111185g00001 82 ProSiteProfiles Protein kinase domain profile. 1 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme111185g00001 82 PANTHER OS01G0253100 PROTEIN 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme111185g00001 Trme-Chr111185 8 615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme111185g00001 1 82 Strubbelig Receptor Gene Family AT4G03390 81.707 3.76e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trme111185g00001 PK_Tyr_Ser-Thr 7.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme111185g00001 - - mtr:25492087 159.458