Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1111804g00001 AACATGATCTCCCTGAGGGTTGAGAGTTCAGACATGATAGTCGATGTGAAGAAGAAGATTTCCGACAAGGCAGGCATTCCAGTGCATAATCAATGTCTGATCTTTGCTGGTGAGCCACTAGAAGACAACCTAACCCTTGCCAATTATAACATTCAAGAGAAGTCAACCATCTACCTTGTCATCCGCCTCATTGCGAACTAG 201 0.4428 NMISLRVESSDMIVDVKKKISDKAGIPVHNQCLIFAGEPLEDNLTLANYNIQEKSTIYLVIRLIAN 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1111804g00001 66 PANTHER UBIQUITIN 3 63 - -
Trme1111804g00001 66 Pfam Ubiquitin family 3 63 IPR000626 GO:0005515
Trme1111804g00001 66 Gene3D - 1 64 - -
Trme1111804g00001 66 PRINTS Ubiquitin signature 1 21 IPR019956 -
Trme1111804g00001 66 PRINTS Ubiquitin signature 43 64 IPR019956 -
Trme1111804g00001 66 PRINTS Ubiquitin signature 22 42 IPR019956 -
Trme1111804g00001 66 SUPERFAMILY Ubiquitin-like 2 63 IPR029071 -
Trme1111804g00001 66 FunFam 2'-5'-oligoadenylate synthase-like protein 2 1 63 - -
Trme1111804g00001 66 ProSiteProfiles Ubiquitin domain profile. 1 66 IPR000626 GO:0005515
Trme1111804g00001 66 SMART ubq_7 1 62 IPR000626 GO:0005515
Trme1111804g00001 66 ProSitePatterns Ubiquitin domain signature. 17 42 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1111804g00001 Trme-Chr1111804 2 202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1111804g00001 3 63 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 63.934 7.57e-21 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1111804g00001 - K04523 mtr:11432566 83.5741