Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11101g00001 ATGGCATCAATGTCAGCAACTGGTTCATGGAGTGCTGAGGACAACAAAGCATTTGAAAGGGCAATAATTGATTTTGATAAGGACACACCTGATCGTTGGTCCAATGTTGCTCAAGCTGTTGGTGGAGGGAAGACTGCTGAAGATGTTGAGAGACACTATGAACTTCTTCTTAGGGATATTAACCTCATTGAATCAGATCAAGTTCCACTCCCAAATTACAATGACGTTGAATTAGGAGAAGAGGGATCCACTGACAATGAAAATGAAAATGAATGGGAAGATCGGGGAAGCTTTGATGAGAAGAAAAAGTTATTACTGGAAGATGTGGCTAATACTATTGTGCAATCTGAGGTATTGGTACAACAGAAACATCCTGTAGTTACTCAAAAAGATGATAATTTAAAGGTTGTGACTGCGGGTAACCAATCCACGACTGAGGTACCAGAGGTGGACAATGAACAGCCTACGGCAGATGATATTGTTACACCAACTCCAACCTCATTGGTTGCGGGAAGACATGAAGTGCCTGATAATGATGAAATTGAGGGGCAGAATTTTGTTTCACAAGAAACTCATGCGGAGCCAGTGCATCAACTTAACAATGATGATGGAGAGGATATTCGCATGGTCCCTGCAACACAACTTGTGAGAGTTGTTAATGATGAGGAATTTGATGATGTGGTGCAAAAAGACTTACAGGTAGTAAAGAAGTTATGTGCTGATATGGCAGAAGCAAACCAAGGACAACAAGAAGAGTCATTCGCGCCATTTGTCTCTAAATCTCGAAAAAAGAAGAACAAGAACTTAGCCAAAAGCGTAGGTCACCCATATCATACCCGTTCTAAGGGTGCCCCCCTAACATGTCTTTATGAAGATCATCTTATATTTCAGCACCATGTGGCCGATAACTCGTGTGCGGCATAG 924 0.4177 MASMSATGSWSAEDNKAFERAIIDFDKDTPDRWSNVAQAVGGGKTAEDVERHYELLLRDINLIESDQVPLPNYNDVELGEEGSTDNENENEWEDRGSFDEKKKLLLEDVANTIVQSEVLVQQKHPVVTQKDDNLKVVTAGNQSTTEVPEVDNEQPTADDIVTPTPTSLVAGRHEVPDNDEIEGQNFVSQETHAEPVHQLNNDDGEDIRMVPATQLVRVVNDEEFDDVVQKDLQVVKKLCADMAEANQGQQEESFAPFVSKSRKKKNKNLAKSVGHPYHTRSKGAPLTCLYEDHLIFQHHVADNSCAA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11101g00001 307 CDD SANT 9 57 IPR001005 -
Trme11101g00001 307 Gene3D - 2 70 - -
Trme11101g00001 307 SMART sant 6 59 IPR001005 -
Trme11101g00001 307 MobiDBLite consensus disorder prediction 72 96 - -
Trme11101g00001 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 4 86 IPR044636 GO:0003700
Trme11101g00001 307 MobiDBLite consensus disorder prediction 142 163 - -
Trme11101g00001 307 MobiDBLite consensus disorder prediction 245 277 - -
Trme11101g00001 307 SUPERFAMILY Homeodomain-like 8 64 IPR009057 -
Trme11101g00001 307 ProSiteProfiles SANT domain profile. 5 61 IPR017884 -
Trme11101g00001 307 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
Trme11101g00001 307 FunFam Transcription factor SRM1 2 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11101g00001 Trme-Chr11101 120 1665 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme11101g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11101g00001 - - gmx:100804396 114.775