Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11094g00001 ATGTTGGGACTTTGTCTCGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTTTGAGCGGTCTCGCCTTCAATCCAAAGCTTTGGAGTCGTTGGAGGAGGCAACTAGATTGGAGAAAAACAATTCTGATCTKATTTTTGAGTTGGCGGTTCAATATGCCRAGCACCGAAATWTGACCGCTGCTTTGCGTTCYGCGCGGCATTTCTTCAATGAAACTGGCGGCTCTATAGTKAAAGCTTGGATATTGCTTGCTCTGATTTTGTCTGCACAACAAAGATTTGCGGAAGCTGAAGTGGTGACAGATGCTGCTTTAGAGCAGATTGTGAGATGGGAGCAGGGGCCTCTGCTTAAGCTTAAAGCAAAGCTGAAAATCTCCCAATCAAAAGCCATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCCTTTGGGTCTTGCCGAGTTAGTTCGAAGGTTGAAGATGATAAAGTTAATGAATTCGATATTTGGCACGGTCTCGCAAATTTATATGCCAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAGTTGAAGCAGTACTCTGCGGCTATTTTGCGCACCGAAGGTATTTTGTTTGAAGGACGCGGACAAAACCAAGAAGCTCTCAATACTACTATTAATGCTATACTACTTGAACCAAACCATGTTCCAAGCAAAATCTTAATGAGTGCTTTGATTCAGAAAATGGGTTCAAAGGCTTTGGCTGCTGCAAGAAGCATGCTGTCTGATGCGCTTAGAATAGAACCGACCAACCGAATGGCTTGGTATTCCTTGGGATTGGTTCACAAGAATGATGGCCGAATGGTTGATGCTGCGGACTGCTTCCAGGCAGCTTCCATGCTGGAAGAATTTGATCCCATTGAAAGTTTCAGCAGCCTTCA 935 0.4439 MLGLCLGKQAKVASSDFERSRLQSKALESLEEATRLEKNNSDLIFELAVQYAXHRNXTAALRSARHFFNETGGSIVKAWILLALILSAQQRFAEAEVVTDAALEQIVRWEQGPLLKLKAKLKISQSKAMDAIETYRYLLALVQAQKKSFGSCRVSSKVEDDKVNEFDIWHGLANLYASLSHWKDAEICLQKARELKQYSAAILRTEGILFEGRGQNQEALNTTINAILLEPNHVPSKILMSALIQKMGSKALAAARSMLSDALRIEPTNRMAWYSLGLVHKNDGRMVDAADCFQAASMLEEFDPIESFSSL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11094g00001 311 PANTHER PROTEIN NPG1 1 309 IPR043376 -
Trme11094g00001 311 SUPERFAMILY TPR-like 24 105 IPR011990 GO:0005515
Trme11094g00001 311 SUPERFAMILY TPR-like 114 297 IPR011990 GO:0005515
Trme11094g00001 311 SMART tpr_5 76 109 IPR019734 GO:0005515
Trme11094g00001 311 SMART tpr_5 270 303 IPR019734 GO:0005515
Trme11094g00001 311 SMART tpr_5 166 199 IPR019734 GO:0005515
Trme11094g00001 311 SMART tpr_5 200 233 IPR019734 GO:0005515
Trme11094g00001 311 Gene3D Tetratricopeptide repeat domain 4 305 IPR011990 GO:0005515
Trme11094g00001 311 Coils Coil 19 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11094g00001 Trme-Chr11094 203 1603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11094g00001 1 311 Calmodulin-binding Proteins AT2G43040 64.331 3.69e-145 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11094g00001 K21843 - gmx:100814609 516.924