Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme110929g00001 GACTTACCTGAACATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCTAATGCAAGAGTGAGAGATCCTGTTTATGGTTGTGTAGGGGCCATTTCTTCACTTCAGCAACAAATTGATGTGCTACAAACCCAATTGGCTGTGGCCCAAGCTGAGGCAGTACACCTAAGGGTGCGCCAAACTGCATCATCATTTTGGAACAGTGCAGGGCATAGCCCAACTAGTCCAACCTATAGTGGCTCTCCATCATCCAAGATCAATGAATCACAAGCCAAACATATTTTTGATATGGACATGGTGGTGGACCAAGATGGCTATGGTGGTGATTCAATGTGGTGA 342 0.4591 DLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQAKHIFDMDMVVDQDGYGGDSMW 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme110929g00001 113 MobiDBLite consensus disorder prediction 66 90 - -
Trme110929g00001 113 ProSiteProfiles LOB domain profile. 1 54 IPR004883 -
Trme110929g00001 113 Coils Coil 33 53 - -
Trme110929g00001 113 Pfam Lateral organ boundaries (LOB) domain 2 51 IPR004883 -
Trme110929g00001 113 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme110929g00001 Trme-Chr110929 281 622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme110929g00001 1 113 AS2 family AT1G31320 58.621 5.67e-29 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme110929g00001 LOB 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme110929g00001 - - pavi:110748098 162.54