Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11044g00001 ATGTTATCTACCGACACACTTGTTGAGAATTTTCCTGGTTCTGTCAACGGATGCATGTTTGGAAACATTCCTGTCTCTGTTTTTTCAAATCAGAATCCAGAAAATGGTTTCAAATTTCAAGATTCAAATTCAATTTCAATACCCCCTTCAACTCATTCAGATTCTCCAAATGATTCTGGTACAACCTCAAATGTTGAATCTTCTGAGAGTAGTAAATATTCAAATCCTATTCTTAGATTTATAAGTGATATTCTCATGGATGAAGAAGATTATTTGGAGAAGAAACCTTGTATGTTGCAAGATTGTTTGAAACTTCAAGCTGCTGAAAAATCATTTTATGATGTTTTAGGTAATAATAATTTTGATGCAGGAACAGTAACTAGTACTAGTTCTGAGAGTTATAGTAATTCTAGTTATACCACTGATAATTCTATAGTTGATTATGATTCACCTGAAAATAATGCCTATGAGGTGTTTGATAAAATGCCTCATGGCCCATTTAGAGATACACAAGGTGTTTTCAATTTTCCAAGTGATGCTTGGAAAATGAATCAAGAGGGTACTTTGATTTTGGGTTCTAGAGGAGGATCAAGGGAAAAGAGAGGTCTTTTGATGAATGATGTTGGTATTTTACATGAAGAGGATCTGAGAAGTAGCAAGGTTTCAGCTGTTTATTCTGATGATTCAGAGTTATCAGAGATGTTTGATGAGGTACTTCTTTGTAAGGATGGTAAAAGTCCATCCATTTTTGGTGCTAATTCTGAACCATCATCGCATTCTAGTTCATTAGGATCTAATGGTAATGGAAAAACATCGCGTTCTAAGAAAGGTTCAAACAAGGTTAAAAAACTAAGTTCTACGGTAGATTTATGGACTTTGTTAACTCAATGTGCACAAGCTGTTGGTAGCTATGATCAAAGGAATGCCAATGATATACTCAAGCAGATTAGACAGCACTCTTCAGCGCATGGTGATGGACTCCAGCGTTTGGCTCATTACTTTGCTGATGGCCTCGAGGCACGGTTATCTGCTGGGACACCAATGTATAAACAACTGCAGTCGTCATCTTCTGCAGATATGCTAAAAGCTTATAAAGTTTACATCACAGCATCTCCATTTCAACGGATGTCGAATTTCTTGGCAAACAGAACTATTCTCGGTCTGGCACAAAACAAAAGCAGCCTCCATATTATTGACTTTGGTGTTTTCTATGG 1214 0.3641 MLSTDTLVENFPGSVNGCMFGNIPVSVFSNQNPENGFKFQDSNSISIPPSTHSDSPNDSGTTSNVESSESSKYSNPILRFISDILMDEEDYLEKKPCMLQDCLKLQAAEKSFYDVLGNNNFDAGTVTSTSSESYSNSSYTTDNSIVDYDSPENNAYEVFDKMPHGPFRDTQGVFNFPSDAWKMNQEGTLILGSRGGSREKRGLLMNDVGILHEEDLRSSKVSAVYSDDSELSEMFDEVLLCKDGKSPSIFGANSEPSSHSSSLGSNGNGKTSRSKKGSNKVKKLSSTVDLWTLLTQCAQAVGSYDQRNANDILKQIRQHSSAHGDGLQRLAHYFADGLEARLSAGTPMYKQLQSSSSADMLKAYKVYITASPFQRMSNFLANRTILGLAQNKSSLHIIDFGVFYG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11044g00001 405 MobiDBLite consensus disorder prediction 250 274 - -
Trme11044g00001 405 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 227 405 IPR005202 -
Trme11044g00001 405 MobiDBLite consensus disorder prediction 38 70 - -
Trme11044g00001 405 MobiDBLite consensus disorder prediction 250 280 - -
Trme11044g00001 405 ProSiteProfiles GRAS family profile. 281 405 IPR005202 -
Trme11044g00001 405 Pfam GRAS domain family 292 405 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11044g00001 Trme-Chr11044 458 1671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11044g00001 11 402 GRAS Transcription Factor Family AT2G29060 33.890 2.17e-50 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme11044g00001 GRAS 1.2e-28 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11044g00001 - - lja:Lj3g3v3213190.1 440.654