Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme110415g00001 ATGAACATTTCATTGTTCATTGGGAGCTATATAGTGGCATTTACAATGCTATGGAGATTGGCAATTGTAGTATTCCCATTTTTAATTCTTCTAGTGATCCCTGGATTAATCTATGGCAAGACATTGATGAGTTTATCAAGCAAGATAAGGGAAGAGTACAATCAAGCTGACACAATAGCAGAACAAACAATATCTTCCATTAGAACTGTTTATTCATTTGTGGGAGAAAACAAATCTATGATTGCTTTCTCTAATGCTCTACAAGGGACTGTTAATTTGGGTTTAAAACAAGGATTAGCTAAAGGTTTAGCTATTGGAAGCAATGGTTTTGTGTTTGCAATTTGGTCTTTCATGTGTTATTATGGAAGTAGATTGGTGATGTACCATGGTGCTAAAGGAGGGACAGTTTTTGCTGTTGGAGCAACCATAGCACTTGGTGGATTGTAA 447 0.3602 MNISLFIGSYIVAFTMLWRLAIVVFPFLILLVIPGLIYGKTLMSLSSKIREEYNQADTIAEQTISSIRTVYSFVGENKSMIAFSNALQGTVNLGLKQGLAKGLAIGSNGFVFAIWSFMCYYGSRLVMYHGAKGGTVFAVGATIALGGL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme110415g00001 148 Gene3D ABC transporter type 1, transmembrane domain 1 148 IPR036640 GO:0005524|GO:0016020
Trme110415g00001 148 Pfam ABC transporter transmembrane region 2 139 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme110415g00001 148 SUPERFAMILY ABC transporter transmembrane region 2 140 IPR036640 GO:0005524|GO:0016020
Trme110415g00001 148 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 2 148 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme110415g00001 148 PANTHER ABC TRANSPORTER B FAMILY 1 147 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme110415g00001 Trme-Chr110415 45 491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme110415g00001 3 148 Calmodulin-binding Proteins AT2G36910 39.456 6.97e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme110415g00001 K05658 - gmx:100809399 247.284