Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme110343g00001 TTCCATGTTGTGTCAGAGTTTGATGATTCAAAGAGAAGTTGCAGAAGGAGACTTGCAGGGCACAACGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCGAGGAATTCCTCACAAGGCGGGTGTGCTCTCTCTCTTCTGTCATCTAGGACTGATTCATGGCTTTCACCTGCTGATCTCTCTGTAAGATGCAGTGCTGCGTTAAGCGAATTGATAGCAGAAAATCGGGCAGCAATCATGGCTAGGCAATATGTCTCAGATAGAGACTGGCATTTGCACCACCATGCCATGGAAGACTACAGGGAGATCCAGCCCGAGTCGAATTATTTCCCACAACAGATGTTTCCTCAGACGCACTAG 360 0.475 FHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRTDSWLSPADLSVRCSAALSELIAENRAAIMARQYVSDRDWHLHHHAMEDYREIQPESNYFPQQMFPQTH 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme110343g00001 119 ProSiteProfiles Zinc finger SBP-type profile. 1 28 IPR004333 GO:0003677
Trme110343g00001 119 MobiDBLite consensus disorder prediction 18 39 - -
Trme110343g00001 119 SUPERFAMILY SBT domain 1 33 IPR036893 GO:0003677|GO:0005634
Trme110343g00001 119 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 52 IPR044817 GO:0003677
Trme110343g00001 119 Pfam SBP domain 1 27 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme110343g00001 Trme-Chr110343 60 630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme110343g00001 1 49 SBP-box Gene Family AT3G15270 57.143 2.67e-12 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trme110343g00001 SBP 6.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme110343g00001 - - vvo:131621975 234.958