Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme110327g00001 ATTGAGTATCTACACACGGGATGTGTCCCAGCAGTTATCCATAGAGACCTAAAAAGCAGCAACATTCTTCTTGACAGGCACATGAGAGCTAAGGTTTCAGATTTTGGCCTTTCGAAACTTGCTGTTGATGGAGCCTCTCATGTCTCTAGCATAGTTCGGGGTACAGTAGGATATCTGGATCCTGAGTAA 189 0.4444 IEYLHTGCVPAVIHRDLKSSNILLDRHMRAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPE 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme110327g00001 62 Pfam Protein kinase domain 1 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme110327g00001 62 Gene3D Transferase(Phosphotransferase) domain 1 1 62 - -
Trme110327g00001 62 ProSiteProfiles Protein kinase domain profile. 1 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme110327g00001 62 PANTHER OS01G0750732 PROTEIN 1 62 - -
Trme110327g00001 62 SUPERFAMILY Protein kinase-like (PK-like) 1 62 IPR011009 -
Trme110327g00001 62 ProSitePatterns Serine/Threonine protein kinases active-site signature. 12 24 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme110327g00001 Trme-Chr110327 191 379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme110327g00001 1 62 Receptor kinase-like Gene Family AT1G67720 70.968 2.02e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme110327g00001 Pkinase 1.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme110327g00001 - - mof:131168246 125.561