Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme110274g00001 ATGGGAGAAGTTGTTTTATTGGTTGATAATTTGAAAACATTTTCTGGGTTTTCTCGTTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTTCAAAAGCTTAGAAGCTCCTTGTGCTTGTTCTGGTACTGTTAAGTTTGCTCATAGAGATTGCATTCAAACATGGTGTAATGAGAAAGGAAACACAACTTGTGAAATTTGTTTACAGGTATGA 213 0.3427 MGEVVLLVDNLKTFSGFSRCRICHEEEFESFKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQV 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme110274g00001 70 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 70 IPR013083 -
Trme110274g00001 70 CDD RING_CH-C4HC3_MARCH 20 67 - -
Trme110274g00001 70 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 69 IPR033275 -
Trme110274g00001 70 FunFam E3 ubiquitin-protein ligase MARCH4 9 70 - -
Trme110274g00001 70 SUPERFAMILY RING/U-box 18 68 - -
Trme110274g00001 70 ProSiteProfiles Zinc finger RING-CH-type profile. 12 70 IPR011016 GO:0008270
Trme110274g00001 70 SMART ringv_2 19 68 IPR011016 GO:0008270
Trme110274g00001 70 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme110274g00001 Trme-Chr110274 187 497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme110274g00001 20 70 C3H Transcription Factor Family AT2G37950 44.231 4.56e-08 45.8