Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme110258g00001 TATGTTGTGTATGTTAAGGAAGGAGTGTACGATGAGTTGGTTACAGTGACAAAGAAAATGGTGAACCTAACCATGTATGGTGATGGTGGTTTAAAGAGTATCATCACCGGCAACAAGAATTACGTCGATGGAGTCAGAACTTTCCAAACTGCATCATTCGTGGTACTTGGCGATGGATTCTTGGGCAGAGACATGGGATTCAGAAACACAGCTGGTGCCATCAAGCATCAAGCCGTGGCCGCTAGAATCCAAGCAGATCAAGCCATATTTGTCAACTGCAACTTCGAAGGTTATCAAGACACATTG 306 0.4412 YVVYVKEGVYDELVTVTKKMVNLTMYGDGGLKSIITGNKNYVDGVRTFQTASFVVLGDGFLGRDMGFRNTAGAIKHQAVAARIQADQAIFVNCNFEGYQDTL 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme110258g00001 102 PANTHER PECTINESTERASE 1 102 - -
Trme110258g00001 102 Pfam Pectinesterase 1 102 IPR000070 GO:0030599|GO:0042545
Trme110258g00001 102 SUPERFAMILY Pectin lyase-like 1 102 IPR011050 -
Trme110258g00001 102 Gene3D - 1 102 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme110258g00001 Trme-Chr110258 55 656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme110258g00001 1 102 Carbohydrate Esterase AT2G26450 62.745 6.56e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme110258g00001 - - gmx:100807628 185.652