Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11011g00001 TATCTAGAGGAGTCACTTGAGCGTAGGCGGCTTAACAATGAAGTNATAGAACTCAAGGGAAATATCAGAGTTTTCTGCAGATGCAGACCGTTAAATGAAAATGAAATTGCTAATGAATCAGCGGTATCTGTTGTCAATTTTGAGTCAGCTTCTGAGGAGCTTCAAGTTATTTGCTCCGATTCTTCTAAAAAGCAATTTAAATTTGATCACGTATTCAAACCTGAAGATAATCAAGAGGCTGTTTTTGCACAAACAAAATCTATTGTTGCTTCAGTTTTAGATGGATATAATGTTTGCATTTTCGCATATGGTCAAACTGGAACTGGTAAGACTTTTACCATGGAGGGAACACCAGAGCATCGGGGAGTTAACTATAGAACCCTTGAGGAATTATTTCGGATTTCTGAAGATAGACAAGGCACGATGAAATATGAATTGCTTGTTAGTATGTTGGAGGTTTACAATGAAAAGATAAAAGATCTCTTGGCCGGAAATCCTTCTGAAGCCACTAAGAAGTTGGAGGTAAAGCAAGCTGCAGATGGAACCCAAGAAGTCCCAGGACTTGTCGAAACTCGTGTTTATGGAGCAGATGGTGTTTGGGAAATTCTGAAGTCTGGAAACAGAGTCAGATCAGTTGGTTCCACAAGTGCTAATGAGCTTAGCAGTCGTTCTCATTGTTTGGTGCGGGTAACTGTTGTGGGGGAGAATTTAATCAATGGCCAGAGAACAAAAAGTCACCTTTGGCTAGTAGACTTAGCTGGCAGTGAGCGTGTAGGGAAAACTGATGCTGAAGGAGAAAGGCTGAAGGAATCTCAATTCATAAATAAGTCTCTATCAGCACTTGGTGATGTTATTGCAGCACTTGCGTCCAAATCAGCCCACATACCTTACAG 893 0.4065 YLEESLERRRLNNEVIELKGNIRVFCRCRPLNENEIANESAVSVVNFESASEELQVICSDSSKKQFKFDHVFKPEDNQEAVFAQTKSIVASVLDGYNVCIFAYGQTGTGKTFTMEGTPEHRGVNYRTLEELFRISEDRQGTMKYELLVSMLEVYNEKIKDLLAGNPSEATKKLEVKQAADGTQEVPGLVETRVYGADGVWEILKSGNRVRSVGSTSANELSSRSHCLVRVTVVGENLINGQRTKSHLWLVDLAGSERVGKTDAEGERLKESQFINKSLSALGDVIAALASKSAHIPY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11011g00001 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 297 IPR027417 -
Trme11011g00001 297 PRINTS Kinesin heavy chain signature 95 116 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme11011g00001 297 PRINTS Kinesin heavy chain signature 215 232 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme11011g00001 297 PRINTS Kinesin heavy chain signature 295 297 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme11011g00001 297 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme11011g00001 297 SMART kinesin_4 19 297 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme11011g00001 297 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trme11011g00001 297 ProSiteProfiles Kinesin motor domain profile. 21 297 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme11011g00001 297 Pfam Kinesin motor domain 27 297 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme11011g00001 297 Gene3D Kinesin motor domain 16 297 IPR036961 -
Trme11011g00001 297 PANTHER KINESIN-LIKE PROTEIN KLP-3 1 297 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11011g00001 Trme-Chr11011 37 1606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11011g00001 1 297 Calmodulin-binding Proteins AT5G65930 41.275 3.27e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11011g00001 K10406 - gmx:100788477 504.982