Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109971g00001 GCCACAGGCGGTGGTCGCAAAAACGGGCCCACAGGAACAGTCAGATACAGAGAATGTCAAAAGAATCACGCCGTTAGCATCGGAGGTCACGCCGTTGATGGATGTTGTGAGTTTTTAGCAGCTGGAGAAGAAGGAACACTGGAAGCCGTAATTTGCGCTGCCTGTAACTGTCACCGGAATTTTCACCGTAAAGAGATCGACGGTGAAATCATTTCTCATAATCAACAATCGCGGTCGTCTCATCATGTTCATGCTCAGTACCACCACCACCACCAGCACCATCAAGTATCTCCTTACTACCACCGTGCAGCGCTACCTCCTCCGCCGGGGTACCACCACATGGTAACTCCACCGCCGGTATCACATCATCGGCCGTTAGCTCTTCCACCTGCTGCATCGAGTGGAGGATTCAGTAGAGAAGATGATGACGTGTCAATTCCGAGTAGCAGCGGTGGCGGTGGTGGTGGAAGTGGAATGAAGAAAAGGTTTAGAACAAAATTCACACCGGAGCAGAAAGAAAAGATGCTTGCATTTGCGGATCAGATTGGATGGAGAATTCAGAAGGAAGATGAAGGTGCAATTGAACAATTCTGTGCTGAGAATTGTATTAAGAGAAATGTGCTTAAG 627 0.488 ATGGGRKNGPTGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEIISHNQQSRSSHHVHAQYHHHHQHHQVSPYYHRAALPPPPGYHHMVTPPPVSHHRPLALPPAASSGGFSREDDDVSIPSSSGGGGGGSGMKKRFRTKFTPEQKEKMLAFADQIGWRIQKEDEGAIEQFCAENCIKRNVLK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109971g00001 209 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 15 66 IPR006456 -
Trme109971g00001 209 Gene3D - 146 209 - -
Trme109971g00001 209 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 16 65 IPR006456 -
Trme109971g00001 209 Pfam ZF-HD protein dimerisation region 14 66 IPR006456 -
Trme109971g00001 209 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 209 - -
Trme109971g00001 209 SUPERFAMILY Homeodomain-like 147 209 IPR009057 -
Trme109971g00001 209 MobiDBLite consensus disorder prediction 110 162 - -
Trme109971g00001 209 NCBIfam homeobox domain, ZF-HD class 160 209 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme109971g00001 Trme-Chr109971 3 629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme109971g00001 14 209 ZF-HD Transcription Factor Family AT4G24660 50.254 2.59e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trme109971g00001 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109971g00001 - - mtr:11435175 321.242