Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10996g00001 ATGTTTGTAGGCGACCCTTCTGAGCAGAAGCTTGGATGGCCTCTACTCCGCAGAGCAAATTCAGAAATGTCACCAAGCCATCATGGAAGGGACATGTCTGTAGTACAATGGGTAATGACCTTACCAGATCGTTCACCACATAGTAGTTCTCAATCATCTTCCAGCGACGAAAATCTATTTGACAGGAGTATCAGTGAAATTGAGGATGAGAGCTTAAAAAATTATTCACCTTCATCTGTTCTACTACCAAAAGGCATAGAAGGGATATTAAATCTAAATTCACTTAATTGCAAGGGGTTCAGTCTTGAAGCTCTCAAGTCCTGCACTGGCCAATTCTCTTCAGAAAACTTGATCGGGAAAGGCGGGAGCAACCGTGTGTACAAAGGAGTACTCCCTGATGGAAAGCCAATTGCAGTTAAAGTATTGAAGTCATCAAAAGAAGCATGGAAAGATTTTGCCTTTGAGGTGGAAATAATATCTTCATTGAAGCACAAAAACATTACTCAACTACATGGAATTTGCATAGAGGACAATACTTTAATATCTGTTTATGATTATTTTTCTAAAGGCAGCTTAGAGGAAAATCTACATGGAAAGAACAAGGATGGATCCCTTTTATCATGGGAAGTGAGATTTAATGTAGCTGTTGGAATCGCGGAGGCGCTTGATTACCTACACACAGAAACATTGAAGCCTGTTATACATAGAGATATCAAGTCTTCAAACATTCTTCTTTCCAAGGAACTTGAACCACAATTGTCTGATTTTGGACTTGCTATTTGGGGACCAACAACTTCATCCTTTTTGACAAAACAAGATGTAGTAGGAACATTTGGTTACCTTGCTCCTGAATACTTCATGTATGGAAAAGTCAGCGATAAGATCGATGTCTATGCCTTTGGTGTTGTACTACTTGAACTAATATCAGGTAGGGAACCAATCAGCTCTGAATCTTGCAAAGGACAGGAGAGCTTGGTAGCTTGG 984 0.3984 MFVGDPSEQKLGWPLLRRANSEMSPSHHGRDMSVVQWVMTLPDRSPHSSSQSSSSDENLFDRSISEIEDESLKNYSPSSVLLPKGIEGILNLNSLNCKGFSLEALKSCTGQFSSENLIGKGGSNRVYKGVLPDGKPIAVKVLKSSKEAWKDFAFEVEIISSLKHKNITQLHGICIEDNTLISVYDYFSKGSLEENLHGKNKDGSLLSWEVRFNVAVGIAEALDYLHTETLKPVIHRDIKSSNILLSKELEPQLSDFGLAIWGPTTSSFLTKQDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSESCKGQESLVAW 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10996g00001 328 ProSiteProfiles Protein kinase domain profile. 112 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10996g00001 328 SMART serkin_6 112 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10996g00001 328 PANTHER OS08G0249100 PROTEIN 27 328 IPR046958 -
Trme10996g00001 328 Gene3D Phosphorylase Kinase; domain 1 87 186 - -
Trme10996g00001 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Trme10996g00001 328 Gene3D Transferase(Phosphotransferase) domain 1 187 327 - -
Trme10996g00001 328 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 81 186 - -
Trme10996g00001 328 SUPERFAMILY Protein kinase-like (PK-like) 94 320 IPR011009 -
Trme10996g00001 328 Pfam Protein kinase domain 113 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10996g00001 Trme-Chr10996 260 1624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10996g00001 100 328 Trihelix Transcription Factor Family AT1G70460 47.391 3.61e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme10996g00001 Pkinase 7.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10996g00001 - - tpra:123913065 614.379