Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1099550g00001 ATGCTGTGTTTTACTTACAATTTTAGAACCTGCTTGGAGTTGGGTGAAATATGCAAAGAAGTGGGACTTCCTCCGGGTGTGTTAAATATTCTCACTGGATTAGGACCTGAAGCTGGCGCTCCTTTGGCATCCCATCCTGATGTCGACAAG 150 0.4533 MLCFTYNFRTCLELGEICKEVGLPPGVLNILTGLGPEAGAPLASHPDVDK 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1099550g00001 50 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 10 50 - -
Trme1099550g00001 50 Pfam Aldehyde dehydrogenase family 10 50 IPR015590 GO:0016491
Trme1099550g00001 50 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 6 50 IPR016162 GO:0016491
Trme1099550g00001 50 SUPERFAMILY ALDH-like 9 50 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1099550g00001 Trme-Chr1099550 31 180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1099550g00001 10 50 Aldehyde Dehydrogenase Gene Family AT3G48170 87.805 2.60e-20 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1099550g00001 K00130 - egr:104429486 85.8853