Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109945g00001 AGGTTGACAGGTATTACAGTTGATAAGTCAGTTGAGTTCTCATATGAGGAGTTAGCAAAAGCTACCGATGGCTTTAGCGAGGCTAATATAATCGGCCGAGGTGGATTTGGATCAGTATACTATGCTGAGCTTCGTAACGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAAAGAATTCTTAGCTGAACTAAAGGTTCTGACACATGTTCATCACTTGAACTTGGTGCGGCTAATTGGATATTGTGTGGAGGGCTCTTTATTTTTGGTTTATGAGTACATTGAGAATGGAAATTTAAGTCAACATTTGCGCGGCACAGGTTAA 330 0.397 RLTGITVDKSVEFSYEELAKATDGFSEANIIGRGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGTG 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109945g00001 109 SUPERFAMILY Protein kinase-like (PK-like) 8 107 IPR011009 -
Trme109945g00001 109 ProSiteProfiles Protein kinase domain profile. 25 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme109945g00001 109 Gene3D Phosphorylase Kinase; domain 1 6 95 - -
Trme109945g00001 109 ProSitePatterns Protein kinases ATP-binding region signature. 31 53 IPR017441 GO:0005524
Trme109945g00001 109 Pfam Protein tyrosine and serine/threonine kinase 29 106 IPR001245 GO:0004672|GO:0006468
Trme109945g00001 109 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 2 108 IPR044812 GO:0019199|GO:0045087
Trme109945g00001 109 FunFam LysM receptor kinase 2 4 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme109945g00001 Trme-Chr109945 3 524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme109945g00001 2 109 Receptor kinase-like Gene Family AT3G21630 79.630 2.29e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme109945g00001 PK_Tyr_Ser-Thr 4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109945g00001 - K13429 gmx:100802308 206.453