Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109878g00001 TTGTGGTATCCGTTGTCCAAAACATTGGCTGAGAAAGCTGCATGGGATTTTTCCAAAGAAAATGGTTTGGATGTTGTTGTGGTGAATCCTGGTACTGTGATGGGTCCTGTTATTCCACCAAGACTTAATGCAAGCATGCTCATGCTTGTGAGACTTCTTGAAG 163 0.4294 MWYPLSKTLAEKAAWDFSKENGLDVVVVNPGTVMGPVIPPRLNASMLMLVRLLE 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109878g00001 54 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 52 IPR036291 -
Trme109878g00001 54 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 2 45 - -
Trme109878g00001 54 Gene3D - 1 54 - -
Trme109878g00001 54 Pfam NAD dependent epimerase/dehydratase family 3 38 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme109878g00001 Trme-Chr109878 360 522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme109878g00001 1 54 Monolignol Biosynthesis Gene Families AT5G58490 83.333 1.52e-27 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109878g00001 - - cill:122294054 105.916