Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109831g00001 ATGTTGGTGGAGGATCCGGCCACGGATGATGTGATATCGTGGAACGAAGAAGGATCGGCGTTCGTGGTGTGGCAACCGGCGGAGTTTGCTCGTGATCTCCTTCCAACACTCTTCAAGC 118 0.5508 MLVEDPATDDVISWNEEGSAFVVWQPAEFARDLLPTLFK 39
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109831g00001 39 SUPERFAMILY "Winged helix" DNA-binding domain 2 39 IPR036390 -
Trme109831g00001 39 Gene3D - 1 39 IPR036388 -
Trme109831g00001 39 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 39 IPR027725 -
Trme109831g00001 39 Pfam HSF-type DNA-binding 2 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme109831g00001 Trme-Chr109831 1 118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme109831g00001 2 39 HSF AT2G41690 84.211 1.88e-19 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trme109831g00001 HSF_DNA-bind 4.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109831g00001 K09419 - mnt:21394538 81.6481