Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10980g00001 ATCCATTTCCGACAACAGCATTTCTTATGTGAAGATGAGGCTTGCCTTGCCAAGAAATTTATTGTTTTTCAATCTGAATCAGAGATGAAGAGACATAATGCTATGGAACATGGAGGGCGTATGTCACGGTCAAAGCGTAATGCTGCTCTTCAGGCATGTACAATCACAATCTTTTCTTCTCGAAATCACTTCTCATGTCTGTTGATACCAACTAGTTTTCGATATAGACACAATAATGAACAGGATCAACGCCGTGGAAGAGGCCGTACGTTTCGTCGTGATCATTCTGAAAATCAACTTTCCATGGCCATTGAAGCCAGTTTGGAGACTGCTAATGCTGAGCAAACATATCGTGAGCCAACTTCAAGTAATGGGCAAATTGCTTATGATGACAGGGATGCAGATATTGGTTCCATCATCAATCCGTTTGAATCATTAGCTACGGCAGGTTCTGAATCAACTTCAAGATACCGTCAGGCCTTAGGGCATAGCTCTAAACCATTGGTAGATTCTTCCTTTCCTCCACTTCCCGTAACTTCCAGCAATGGCAAGCAAAGGTCCAAACATGAGCTTGAAGGTTCATCAAGCAATACCATGGCAGCACGTTTACGTCAGCATGGCAACAGAAATATATCTGTTATTAATTCTGGAAATGCCTGGTCTGTACCAGGCCGTGGACCTGTGCAACCATCAAGTACTCCTTCACAATCTAAAAAGTCAAAAAATCGTGCTCTTGGAGGGTCTCAGAATTCTGGCCAAACGAAGACAGTAATTAACAGCGTAATTCCACCATCAAGTTATGCTAATTCTATTCAAGCTGCNNNNNNNNNNANNNNNNNTAGAATCGTTCACTCCGCATCAGCTCCAAACCTCGTTGAGAACAACCCTGTTGGAGTTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGGGAGCAAGTTACCTATGAGTAGCCAGCCTCCATTGAATGTGGAAAATGTTCAGTCTGCCAACAAGTCCTTGGTTGAGAAAATTCGCAGTGCGCTTGATTTTGATGAAGATAGATACACAATATTTAAAGACATATCTGCTCAATATCGCCAAGGCACAATAGATACTGATACATATGTGGATTATGTGCAGCAGTTTGGCTTGTTTGAACTTGTACCTGAGTTGGCAAGACTATGCCCGGATCCTCGGAAGCAGAAAGAACTTGTGGAATCTTACAATGCTGGTTTGCATAGAAATGCTTTTCAAGAAAATGACAGGGTTTATGGCAGCGCTAGCACCCAGCGTAA 1280 0.4195 IHFRQQHFLCEDEACLAKKFIVFQSESEMKRHNAMEHGGRMSRSKRNAALQACTITIFSSRNHFSCLLIPTSFRYRHNNEQDQRRGRGRTFRRDHSENQLSMAIEASLETANAEQTYREPTSSNGQIAYDDRDADIGSIINPFESLATAGSESTSRYRQALGHSSKPLVDSSFPPLPVTSSNGKQRSKHELEGSSSNTMAARLRQHGNRNISVINSGNAWSVPGRGPVQPSSTPSQSKKSKNRALGGSQNSGQTKTVINSVIPPSSYANSIQAAXXXXXXRIVHSASAPNLVENNPVGVSISDFPPVSAAQGSKLPMSSQPPLNVENVQSANKSLVEKIRSALDFDEDRYTIFKDISAQYRQGTIDTDTYVDYVQQFGLFELVPELARLCPDPRKQKELVESYNAGLHRNAFQENDRVYGSASTQR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10980g00001 426 MobiDBLite consensus disorder prediction 78 99 - -
Trme10980g00001 426 PANTHER ZINC FINGER PROTEIN 598 1 418 IPR044288 GO:0061630|GO:0072344
Trme10980g00001 426 MobiDBLite consensus disorder prediction 192 219 - -
Trme10980g00001 426 MobiDBLite consensus disorder prediction 157 255 - -
Trme10980g00001 426 MobiDBLite consensus disorder prediction 225 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10980g00001 Trme-Chr10980 83 1674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10980g00001 1 425 C2H2 Transcription Factor Family AT3G62240 43.202 1.10e-90 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10980g00001 K22381 - gmx:100780426 557.755