LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme10978g00001	ATGTATGTAGTAGGACTTCTGGAGTATGCAGCAACAGCAGGATTAACAGTGGTTGTTATAATTTTCTCTATAGGCCCAATTTCTTGTGCACATGTTAACCCAGCTGTTACAATAGCCTTTGCAACAATTGGTCAATTTCCATGGTTTAAGGTACCAATTTACATAATAGCACAAACAATTGGTTCTTTGATGGCAACATATATTGGTAGCCTTATCTATGGCATAAAATCAGATATTATGATGACTCAACCACTCCAAGGTTCCAACTCTGCCTTTTGGGTGGAGCTTATTGCAACATTCATCATCATGTTTTTGGTTACAGCTTTGACATCTGAACCTCAATCAGTGGGCCATTTATCTGGGTTTGTTGCTGGAATTGCAATTGGGCTTGCTGTACTAATCACAGG	407	0.3907	MYVVGLLEYAATAGLTVVVIIFSIGPISCAHVNPAVTIAFATIGQFPWFKVPIYIIAQTIGSLMATYIGSLIYGIKSDIMMTQPLQGSNSAFWVELIATFIIMFLVTALTSEPQSVGHLSGFVAGIAIGLAVLITG	136

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme10978g00001	136	PRINTS	Major intrinsic protein family signature	13	37	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Trme10978g00001	136	PRINTS	Major intrinsic protein family signature	50	69	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Trme10978g00001	136	PRINTS	Major intrinsic protein family signature	125	136	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Trme10978g00001	136	PRINTS	Major intrinsic protein family signature	94	112	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Trme10978g00001	136	SUPERFAMILY	Aquaporin-like	3	135	IPR023271	-
	Trme10978g00001	136	Gene3D	Glycerol uptake facilitator protein.	2	136	IPR023271	-
	Trme10978g00001	136	ProSitePatterns	MIP family signature.	31	39	IPR022357	-
	Trme10978g00001	136	PANTHER	AQUAPORIN NIP2-1	4	136	IPR034294	-
	Trme10978g00001	136	Pfam	Major intrinsic protein	5	134	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Showing 1 to 9 of 9 entries

Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme10978g00001	14	134	Major Intrinsic Protein MIP	AT4G19030	40.310	7.00e-28	100

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme10978g00001	K09874		-	gmx:100817660	239.58

Showing 1 to 1 of 1 entries