Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10978g00001 ATGTATGTAGTAGGACTTCTGGAGTATGCAGCAACAGCAGGATTAACAGTGGTTGTTATAATTTTCTCTATAGGCCCAATTTCTTGTGCACATGTTAACCCAGCTGTTACAATAGCCTTTGCAACAATTGGTCAATTTCCATGGTTTAAGGTACCAATTTACATAATAGCACAAACAATTGGTTCTTTGATGGCAACATATATTGGTAGCCTTATCTATGGCATAAAATCAGATATTATGATGACTCAACCACTCCAAGGTTCCAACTCTGCCTTTTGGGTGGAGCTTATTGCAACATTCATCATCATGTTTTTGGTTACAGCTTTGACATCTGAACCTCAATCAGTGGGCCATTTATCTGGGTTTGTTGCTGGAATTGCAATTGGGCTTGCTGTACTAATCACAGG 407 0.3907 MYVVGLLEYAATAGLTVVVIIFSIGPISCAHVNPAVTIAFATIGQFPWFKVPIYIIAQTIGSLMATYIGSLIYGIKSDIMMTQPLQGSNSAFWVELIATFIIMFLVTALTSEPQSVGHLSGFVAGIAIGLAVLITG 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10978g00001 136 PRINTS Major intrinsic protein family signature 13 37 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme10978g00001 136 PRINTS Major intrinsic protein family signature 50 69 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme10978g00001 136 PRINTS Major intrinsic protein family signature 125 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme10978g00001 136 PRINTS Major intrinsic protein family signature 94 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme10978g00001 136 SUPERFAMILY Aquaporin-like 3 135 IPR023271 -
Trme10978g00001 136 Gene3D Glycerol uptake facilitator protein. 2 136 IPR023271 -
Trme10978g00001 136 ProSitePatterns MIP family signature. 31 39 IPR022357 -
Trme10978g00001 136 PANTHER AQUAPORIN NIP2-1 4 136 IPR034294 -
Trme10978g00001 136 Pfam Major intrinsic protein 5 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10978g00001 14 134 Major Intrinsic Protein MIP AT4G19030 40.310 7.00e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10978g00001 K09874 - gmx:100817660 239.58