Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109733g00001 ATGGATTCCCGCTCACCACCACCACAACCACCACAATCAACCATCATGGTGGGACCCACATCTTACGCTCCAACAAACACCTCCATGATCAGCCCTAATTCCTCCACCACCACCGCCACCAACCTTATGGCACCCGCCACCGCTCGATTTCCTTTCTCCTCTTCGCAACAATCGGAGCCATTCTCCGTCACTCACGACGCTCCTCCTTCCTCTCCGTCTACTCTTGCTAAGAAAAAACGTGGCCGTCCGAGGAAATACTCCCCTGATGGTAACATTGCTCTTGGTTTGGCTCCTACTCGTGTTTCTTCTCCTGCCGCTGCTACTTCCGCCTCCGCCGGTGATTCCGGTAACGCTGATGCTCCTCCCAAGAAACATAGAGGAAGACCTCCTGGTTCTGGGAAGAAGCAGTTAGATGCGCTTGGTGCTGGTGGGACTGGATTCACTCCACACGTGATTGTGGTGGAGTCTGGTGAG 474 0.5443 MDSRSPPPQPPQSTIMVGPTSYAPTNTSMISPNSSTTTATNLMAPATARFPFSSSQQSEPFSVTHDAPPSSPSTLAKKKRGRPRKYSPDGNIALGLAPTRVSSPAAATSASAGDSGNADAPPKKHRGRPPGSGKKQLDALGAGGTGFTPHVIVVESGE 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109733g00001 158 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 38 158 IPR039605 GO:0003680
Trme109733g00001 158 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Trme109733g00001 158 SMART AT_hook_2 77 89 IPR017956 GO:0003677
Trme109733g00001 158 PRINTS AT-hook-like domain signature 77 87 IPR017956 GO:0003677
Trme109733g00001 158 PRINTS AT-hook-like domain signature 121 132 IPR017956 GO:0003677
Trme109733g00001 158 MobiDBLite consensus disorder prediction 15 71 - -
Trme109733g00001 158 MobiDBLite consensus disorder prediction 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme109733g00001 Trme-Chr109733 8 602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme109733g00001 76 158 AT-hook Motif Nuclear Localized (AHL) Family AT5G46640 60.440 4.83e-24 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109733g00001 - - gmx:100789717 153.68