Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109729g00001 ATGTTGGTGGAGGGATTGAAATCATTGGTTGATGTTGGTGGAGGTATAGGGACAATGACTAAGGTTATTGCTAAGTCATTCCCAAACACTGAATGCATTGTGTTTGATCTCCCACATGTTGTTGATGGCTTGCAAGGAAATGGAAACATAAAATATGTTGGAGGTGACATGTTTGAGGCTATTCCTCCTACCCAGTCAATTTTACTCAAG 210 0.4048 MLVEGLKSLVDVGGGIGTMTKVIAKSFPNTECIVFDLPHVVDGLQGNGNIKYVGGDMFEAIPPTQSILLK 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109729g00001 70 PANTHER O-METHYLTRANSFERASE 4 69 IPR016461 GO:0008168
Trme109729g00001 70 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 4 63 IPR029063 -
Trme109729g00001 70 Gene3D Vaccinia Virus protein VP39 2 70 IPR029063 -
Trme109729g00001 70 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 70 IPR016461 GO:0008168
Trme109729g00001 70 Pfam O-methyltransferase domain 4 70 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme109729g00001 Trme-Chr109729 204 413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme109729g00001 4 70 Monolignol Biosynthesis Gene Families AT5G54160 50.746 6.39e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109729g00001 - - ccaj:109792296 110.923