Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1096g00001 ATGGATAGGATTCAAGAGGCAGATGAAAATAATAAAACTTCAGTTGTTGGTCTAGCAATCAAGGGTAATAAGAAAAGCAAATATGTTGTACAATGGGCACTTGATAAATTTGTTCATGAAGGGATAAGTATCTTCAAGCTTATTCATGTTAGAGCTATTATAAATGGAGTTCCTACACCAATGGGAGATGTGCTTCCTATTTCACAAGTGCGAAATGATGTAGCAAATGCTTTCAGAAGGGAAGTGGAGTGGCAAACAAATCAAATGCTTCTACCTTTTAAGAGTTTGTGTGAGCAGAGAAAGGTGCGTGTAGATGTTGTAGTGATTGAATCAGATGATGTAGCAACTGCGGTAGCAGAGGAAGTATCTAAGAGTGTTATTACCAACCTTGTCCTTGGAGCTTCATCTTCTGGTATATTTAAAAGATGTCTAGTCTTGGGTGTGATCTATGTCTGGATAGCCATGCTAAGTATTAGGCTACCGATATGTGCACATTTGAATTTTATTAGCAAACAGAAGGGTATGTCTGCAAAAATATCAGTACGCACTCCAAGATTTTGTACAGTTTATGCTGTTTCGAAAGGAAAATTGTCCATACGGCAGTCAGACATGCAGACTGAAGGAAACATTGTAGATGATACCAGTGAAACCAGTTTTTCATCGAGCAGCTCATCGAACTACACTTCCACCTCTCAGACAGATTTTGGCTCAGTTGCATCATCTGCTGCTTTACATTCCTATCCCCTGACAACACGACGACATAAAGCTCTCTCGAGTATAGATCAGGCCCTTCTAAGCACAAGTCCTAATTTAAGTGAAACTAATCATTTTAGAGGCCAATCTCTAGATCTTGGGAGAAAAAATGATGCTACAAGTTCAGATTTTGATCATGCTCTAAGCCAGGCCTCTAGTGGCGGAAGCATTTCAGATACTGAATCTTCCATTTACGGTCAAAATCATGCCAAGTATGTGCCACAAGGTACTAAACCTCCAAAACCAAATAGACAG 1008 0.3948 MDRIQEADENNKTSVVGLAIKGNKKSKYVVQWALDKFVHEGISIFKLIHVRAIINGVPTPMGDVLPISQVRNDVANAFRREVEWQTNQMLLPFKSLCEQRKVRVDVVVIESDDVATAVAEEVSKSVITNLVLGASSSGIFKRCLVLGVIYVWIAMLSIRLPICAHLNFISKQKGMSAKISVRTPRFCTVYAVSKGKLSIRQSDMQTEGNIVDDTSETSFSSSSSSNYTSTSQTDFGSVASSAALHSYPLTTRRHKALSSIDQALLSTSPNLSETNHFRGQSLDLGRKNDATSSDFDHALSQASSGGSISDTESSIYGQNHAKYVPQGTKPPKPNRQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1096g00001 336 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 144 - -
Trme1096g00001 336 CDD STK_N 15 195 - -
Trme1096g00001 336 MobiDBLite consensus disorder prediction 296 321 - -
Trme1096g00001 336 MobiDBLite consensus disorder prediction 203 232 - -
Trme1096g00001 336 Gene3D HUPs 6 148 IPR014729 -
Trme1096g00001 336 MobiDBLite consensus disorder prediction 270 289 - -
Trme1096g00001 336 MobiDBLite consensus disorder prediction 296 336 - -
Trme1096g00001 336 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 7 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1096g00001 Trme-Chr1096 128 2280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1096g00001 16 216 U-box Gene Family AT4G25160 44.554 3.42e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1096g00001 - - gsj:114409387 382.104