Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10968g00001 GCTACACCAAAAGCAATCATGCGGACCATGAACGTCAAGGGTTTGACTCTATTTCATCTAAAGAGTCATCTTCAGAAATACAGACTTGGTAAGCAATCCGGAAAAGATATAGGGGAGGGATGCAAAGATGGGATGACAGGTTCCTATCTTTTAGAAAGCCCTGGGACTGATAACTCTTCTCCAAAGTTGCCTACTTCTGACACAAACGAGTAA 213 0.4272 ATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDIGEGCKDGMTGSYLLESPGTDNSSPKLPTSDTNE 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10968g00001 70 MobiDBLite consensus disorder prediction 44 70 - -
Trme10968g00001 70 SUPERFAMILY Homeodomain-like 1 31 IPR009057 -
Trme10968g00001 70 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 53 IPR044848 GO:0003700
Trme10968g00001 70 MobiDBLite consensus disorder prediction 51 70 - -
Trme10968g00001 70 Gene3D - 1 33 - -
Trme10968g00001 70 NCBIfam myb-like DNA-binding domain, SHAQKYF class 1 30 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10968g00001 Trme-Chr10968 595 1289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10968g00001 1 70 G2-like Transcription Factor Family AT3G24120 51.429 8.38e-18 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme10968g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10968g00001 - - vum:124825518 134.42