Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109672g00001 AGAAAGGACCAGCTTTGCCCTCATGCTTGTGTCTTGCAATGCCATCCTGGTCCATGTCCTCCGTGTAAAGCATTTGCCCCTCCTCGTTTGTGTCCTTGTGGAAAGAAAAGAATAGCCACCCGTTGCTCTGATCGGCAGTCTGATCTTACCTGCGGTCAGCGCTGTGATAAGCTTCTTAATTGTGGACGACATCGCTGTGAAAATGCTTGCCATGTGGGTCCTTGTGATCCTTGTCAGGTGCTAATCAATGCCTCTTGCTTTTGTAGTAAAATGATGCAGGCGGCTGTGGTGAATGTGAATTTTTACCAAGCCGGGTTAAGACATGCTGTTGTGGAAAAACAAAGTTGGAGGACGAACGGAAGAGTTGTGTGGATCCGATACCTACATGCTCACAAGTATGTGGCAAGCTCCTTCCTTGCGGGATACATGCTTGTAAGGAGCCATGCCATGTTGGGGAATGTCCACCGTGTAAGGTCCTAA 480 0.4854 RKDQLCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKRIATRCSDRQSDLTCGQRCDKLLNCGRHRCENACHVGPCDPCQVLINASCFCSKMMQAAVVNVNFYQAGLRHAVVEKQSWRTNGRVVWIRYLHAHKYVASSFLAGYMLVRSHAMLGNVHRVRS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109672g00001 159 SMART znfxneu3 61 80 IPR000967 GO:0005634|GO:0008270
Trme109672g00001 159 SMART znfxneu3 6 24 IPR000967 GO:0005634|GO:0008270
Trme109672g00001 159 Pfam NF-X1 type zinc finger 61 79 IPR000967 GO:0005634|GO:0008270
Trme109672g00001 159 Pfam NF-X1 type zinc finger 8 23 IPR000967 GO:0005634|GO:0008270
Trme109672g00001 159 CDD NF-X1-zinc-finger 51 93 - -
Trme109672g00001 159 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 3 93 IPR034078 GO:0003700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Trme109672g00001 zf-NF-X1 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109672g00001 K12236 - tcc:18604204 185.652