Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109623g00001 ATGGATTCGGATCAGGGAAAGCTTTTCATCGGTGGGATTTCATGGGATACTAATGAGGAGAAGCTGAAGGAGCATTTCAGCAATTATGGTGATGTTTTGAACACTTCAGTTATGAGAGAGAAGAACACTGGAAAACCTAGAGGCTTTGGTTTCGTTGTTTTTTCAGATCCTTCTGTTCTTGATAGGGTTCTTGAAGACAAGCATGTTATTGATGGCAGAACGGTGGGTTTTTGTTTTGTTCAATGA 246 0.4024 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVGFCFVQ 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109623g00001 81 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 75 - -
Trme109623g00001 81 SMART rrm1_1 7 78 IPR000504 GO:0003723
Trme109623g00001 81 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 81 IPR000504 GO:0003723
Trme109623g00001 81 Gene3D - 1 81 IPR012677 -
Trme109623g00001 81 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 78 - -
Trme109623g00001 81 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Trme109623g00001 81 SUPERFAMILY RNA-binding domain, RBD 3 75 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme109623g00001 Trme-Chr109623 204 614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme109623g00001 2 54 C2H2 Transcription Factor Family AT2G19380 43.396 1.73e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109623g00001 K14411 - gmx:100786882 147.517