Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10959g00001 ATGAGTTTATTTAATGTAAGACAAATCAAAGGAGCAACAAATAACTTTGACATTGCCAATAAGATTGGAGAAGGAGGATTTGGTCCAGTATACAAGGGGCGTCTATCGGATGGTACATTGGTAGCAGTCAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGCGAGTTTTTAAATGAAATTGGCATGATTTCGGCTTTGAACCACCCTCATCTTGTTAAACTATATGGATGTTGTGTGGAAGGARATCAGTTAATGTTAATCTATGAATATTTGGAAAATAATAGTCTTGCTCGCGCTTTATTTGGAGCTGCAGAACACCAAATAAAATTGGATTGGCCAACAAGATACAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCATATCTCCATGAAGAATCAAGATTGAAGGTTGTTCATAGGGACATCAAGGCAACTAATGTGTTGCTTGATAAAGATCTCAATCCGAAGATATCTGATTTTGGTTTGGCCAAACTCGATGAAGAGGAGAACACTCACATTAGCACTCGAATAGCCGGGACATATGGATACATGGCTCCGGAATATGCTATGCATGGTTATTTGACCGACAAAGCAGATGTCTATAGTTTTGGAATCGTTGCCTTGGAAATCTTACATGGTAGTAACAATACCACTCTTCGACAAAAAGGATCAGAAGCATTCCATCTTCTTGATTGGGCACATGTCTTGAAAGAAGAAAATAATCTAATGGAGCTAGTTGATAAAAGATTGGGTTCAAATTTCAACAAAGAAGAAGCATTGATAATGATAAATGTAGCACTCTTATGCACTAATGTGACTTCAGCACTTAGGCCAGCAATGTCTTCA 849 0.3769 MSLFNVRQIKGATNNFDIANKIGEGGFGPVYKGRLSDGTLVAVKQLSSKSKQGNREFLNEIGMISALNHPHLVKLYGCCVEGBQLMLIYEYLENNSLARALFGAAEHQIKLDWPTRYKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEILHGSNNTTLRQKGSEAFHLLDWAHVLKEENNLMELVDKRLGSNFNKEEALIMINVALLCTNVTSALRPAMSS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10959g00001 283 CDD STKc_IRAK 22 282 - -
Trme10959g00001 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Trme10959g00001 283 SMART serkin_6 16 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10959g00001 283 ProSiteProfiles Protein kinase domain profile. 16 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10959g00001 283 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 282 - -
Trme10959g00001 283 SUPERFAMILY Protein kinase-like (PK-like) 4 282 IPR011009 -
Trme10959g00001 283 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Trme10959g00001 283 FunFam Putative LRR receptor-like serine/threonine-protein kinase 92 283 - -
Trme10959g00001 283 Gene3D Transferase(Phosphotransferase) domain 1 92 283 - -
Trme10959g00001 283 Pfam Protein tyrosine and serine/threonine kinase 18 247 IPR001245 GO:0004672|GO:0006468
Trme10959g00001 283 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10959g00001 Trme-Chr10959 1 1637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10959g00001 4 282 Receptor kinase-like Gene Family AT1G53420 75.627 1.51e-155 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme10959g00001 PK_Tyr_Ser-Thr 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10959g00001 - - cam:101501658 526.168