Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1095788g00001 ACGGCAGTGTTACCGGAGGTGAGTCAATCTGATGTGGCGGCGATTCTATACTCATCGGGAACTACAGGGAAATCGAAAGGCGTGATGCTTACACACCGGAATTTAACGGCGACGGTGGCGGCGTATGACGCTGTTCGGATTCCGACGGAGAGTCCTGCGGTGTCTTTGGTAACG 174 0.546 TAVLPEVSQSDVAAILYSSGTTGKSKGVMLTHRNLTATVAAYDAVRIPTESPAVSLVT 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1095788g00001 58 ProSitePatterns Putative AMP-binding domain signature. 15 26 IPR020845 -
Trme1095788g00001 58 Gene3D - 1 58 IPR042099 -
Trme1095788g00001 58 SUPERFAMILY Acetyl-CoA synthetase-like 3 45 - -
Trme1095788g00001 58 Pfam AMP-binding enzyme 5 45 IPR000873 -
Trme1095788g00001 58 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1095788g00001 Trme-Chr1095788 2 175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1095788g00001 6 44 Monolignol Biosynthesis Gene Families AT1G20480 71.795 7.89e-13 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1095788g00001 K01904 - lja:Lj1g3v3833570.1 83.1889