Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10952g00001 ATGCTCGATCTTCTAGTGCATGCATCCCAATGTCGTTCTGCACATTGCCAATATCCTAATTGTCGCAAAGTGAAGGGACTCTTCCGCCATGGTATGCACTGCAAAACACGTGCTTCCGGAGGCTGTGTTCTTTGTAAGAAAATGTGGTATTTGCTTCAACTTCATGCTCGTGCGTGCAAAGAATCCGAATGCCATGTGCCACGATGCAGAGATTTAAAAGAACATCTAAGGAGGCTGCAGCAGCAGTCTGATTCACGGCGTAGAGCTGCTGTTATGGAAATGATGAGACAGAGAGCTGCAGAAGTTGCTAATAATGCTGGATAA 324 0.4599 MLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNAG 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10952g00001 107 ProSiteProfiles Zinc finger TAZ-type profile. 1 72 IPR000197 -
Trme10952g00001 107 Pfam TAZ zinc finger 2 69 IPR000197 -
Trme10952g00001 107 PANTHER CBP/P300-RELATED 1 98 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trme10952g00001 107 FunFam Histone acetyltransferase HAC1-like protein 1 103 - -
Trme10952g00001 107 Gene3D TAZ domain 1 103 IPR035898 -
Trme10952g00001 107 SMART TAZ_2 1 70 IPR000197 -
Trme10952g00001 107 SUPERFAMILY TAZ domain 2 74 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10952g00001 Trme-Chr10952 1260 1667 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Trme10952g00001 zf-TAZ 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10952g00001 K04498 - gmx:100809207 221.09