Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109490g00001 CAGCCAAGGGAACAAGAGAATCATGCTCCAACAGGAACACAAGCAAACCAGATAATGCAACTATCTCACCCTTTAATCCACAGTGCAGGGGCTTCTACATTTTCATCTTATCTGAGCAGAGATCCATTCCAACATTTTTCTCACAAATATTTTAACCAACAACACTTGCAGACCAAACTCGCCACTTTCTGGGCGAAACAAAACTTAGAAATTCACGAGACCATGGATTTCAAAACTCATCGCATTCCTTTGTTAAGGATCAAAAAGATAATGAAAGCCGATGAGCAAGTGAATAAGATATCGGCGGAAGCGCCTATTCTGTTTGCTAAGGCATGTGAGATGTTTATTATGGAGCTAACAATAAGGTCTTGGGCTAATGCAGATTTTAACAGAAGAAGAACACTTCATAAGGGTGACATTGCATCTGCAATATCAAATACTGATGTATTTGATTTCCTAGTTGATATTGTTCCAAAGGAAGACACAATGGAACATGACATATTTAAGGATATACCAAGAAGTGAGTGTGTTCCATTAAGGAATGTTAATGTTCCTTATTATGTGCCTGTTCCTCTGCAGCCTCAATATGTTCCTGGGCAACCTCAGTATGTTCCTATGCAGCCTCAATATGCTGCAGGTCCATCCTATGGTCCTCAAGG 659 0.4006 QPREQENHAPTGTQANQIMQLSHPLIHSAGASTFSSYLSRDPFQHFSHKYFNQQHLQTKLATFWAKQNLEIHETMDFKTHRIPLLRIKKIMKADEQVNKISAEAPILFAKACEMFIMELTIRSWANADFNRRRTLHKGDIASAISNTDVFDFLVDIVPKEDTMEHDIFKDIPRSECVPLRNVNVPYYVPVPLQPQYVPGQPQYVPMQPQYAAGPSYGPQG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109490g00001 220 Gene3D Histone, subunit A 43 159 IPR009072 GO:0046982
Trme109490g00001 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 81 144 IPR003958 -
Trme109490g00001 220 SUPERFAMILY Histone-fold 47 153 IPR009072 GO:0046982
Trme109490g00001 220 FunFam Nuclear transcription factor Y subunit gamma 47 159 - -
Trme109490g00001 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 52 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme109490g00001 Trme-Chr109490 1 659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme109490g00001 63 199 CCAAT-HAP5 Transcription Factor Family AT5G63470 58.696 5.54e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trme109490g00001 CBFD_NFYB_HMF 5.9e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109490g00001 K08066 - qsa:O6P43_021613 171.014