Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1092g00001 CATAATGAGGATGAAGCCACGGTAAGGGATACATATGGACATGGAACCCACACAGCGTCTACAGCGGCAGGGAAAGTCGTGAGTGGTGCATCGTACTACGGTCTCGCGGCAGGGACAGCAACAGGCGGGTTTCCTGAATCGAGGTTGGCAATTTACAAAGTGTGCTTTCCTGCCTGTTATGGTTCTGGCATCCTTGCGGCATTTGACGATGCCATTTCTGATGGAGTTGATGTGCTTTCTCTCTCGCTCGGTGCATCTCCATTTTTTCGACCGAACTTGACATCTGACCCGATTGCAATTGGAGCTTTCCACGCTGTAGAGCACGGCATTGTGGTAGTTTGCTCAGCTGGGAATTATGGACCAAAGCAAATGACGGTTGTTAACGACGCTCCTTGGATATTAACTGTTGCAGCCACCACCATCGATCGTGATCTTCAGTCCAACATTGTCTTGGGTAATAACAAAGTTGTCAAGGGCGAAGCCATAAATTTCTCACCTCTTTCAAAATCTGCTGATTATCCATTGATAACTGGAGAGTCTGCAAAGACAACTACCGCTGACTTAGCTGAAGCAAGACAATGTCATTCAAGTTCATTAGATAAGAATAAAGTCGAAGGAAAGATTGTTGTATGTGATGGTATAGATGATCGTCAAACAACTAAGGCAAAACTTAATACAGTGAAAGAGGTGGGTGGATTAGGTCTTGTTCATATTACTGACAAAGAAGGAGCAGTGGCAAATAGTTATGGAGACTTCCCAGCAACTGTCATACGATCGAAAGATGCTTCCACAATCCTCCTATATGTCAATTCAACAAACAATCCAGTAGCAACAATTCTACCAACAATTACAGTCATGGATTATAAACCTGCACCTATGGTGGCAATCTTTTCAAGTAGAGGGCCTTCGGGACTTTCAAAGAATATTCTAAAACCTGATATTGCAGCACCAGGTGTTGCCATTCTTGCAGCATGGATTGAAAATAACGTAGAAGATATTCCAAAAGGGAAAAAGCCCTCCCCATATAACATTATATCAGGAACTTCCATGTCATGCCCCCATGTTTCAGGCCTTGCAGGCAGCATTAAATCTAGAAATCCAACTTGGAGTCCCTCTGCAATCAAATCAGCTATCATGACCTCTGCAACTCAAATTAACAATATGAAGGCTCACATTACAACGGATTTAGGATCAGTTGCCACACCTTATGACTATGGAGCAGGGGAAATAACAACAAGTGAATCATTCCAGCCAGGGCTAGTTTATGAAACCACCACCATTGACTACTTGAACTACTTGTGTTACATAGGACTCAACACAACCACAGTTAAGGTTATATCTAAAACCGTCTCCGATAGTTTCAGTTGCCCCGAAGATTCGTCTCCCGATCATATTTCCAACATCAATTACCCTTCCATAGCAATCTCCAACTTCACTAGTAAAGGAACCGTGAATGTGAGTAGAACTGTTACAAATGTTGGTGAAGAAGATGAAACAGTTTACTCTGTCATTGTTGATGCTCCCAATGGGGTGAAACTCCAATTGATTCCAGAGAAATTGGAGTTTACAAAAAGTAGTAAAAAACAAAGCTACCAAGTTATTTTCTCCTCTACTTCATCCTCTGTGAAGGAAGATCTGTTTGGAACTATAACCTGGAGTAATGGTAAATATAATGTTCGAAGTCCTTTTATATTAAGTGTGTAG 1704 0.4208 HNEDEATVRDTYGHGTHTASTAAGKVVSGASYYGLAAGTATGGFPESRLAIYKVCFPACYGSGILAAFDDAISDGVDVLSLSLGASPFFRPNLTSDPIAIGAFHAVEHGIVVVCSAGNYGPKQMTVVNDAPWILTVAATTIDRDLQSNIVLGNNKVVKGEAINFSPLSKSADYPLITGESAKTTTADLAEARQCHSSSLDKNKVEGKIVVCDGIDDRQTTKAKLNTVKEVGGLGLVHITDKEGAVANSYGDFPATVIRSKDASTILLYVNSTNNPVATILPTITVMDYKPAPMVAIFSSRGPSGLSKNILKPDIAAPGVAILAAWIENNVEDIPKGKKPSPYNIISGTSMSCPHVSGLAGSIKSRNPTWSPSAIKSAIMTSATQINNMKAHITTDLGSVATPYDYGAGEITTSESFQPGLVYETTTIDYLNYLCYIGLNTTTVKVISKTVSDSFSCPEDSSPDHISNINYPSIAISNFTSKGTVNVSRTVTNVGEEDETVYSVIVDAPNGVKLQLIPEKLEFTKSSKKQSYQVIFSSTSSSVKEDLFGTITWSNGKYNVRSPFILSV 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1092g00001 567 ProSiteProfiles Serine proteases, subtilase domain profile. 1 416 - -
Trme1092g00001 567 FunFam subtilisin-like protease SBT1.5 142 286 - -
Trme1092g00001 567 Gene3D - 433 567 - -
Trme1092g00001 567 SUPERFAMILY Subtilisin-like 7 415 IPR036852 GO:0004252|GO:0006508
Trme1092g00001 567 Pfam Fibronectin type-III domain 467 564 IPR041469 -
Trme1092g00001 567 Pfam Subtilase family 4 408 IPR000209 GO:0006508|GO:0008236
Trme1092g00001 567 ProSitePatterns Serine proteases, subtilase family, serine active site. 347 357 IPR023828 -
Trme1092g00001 567 Gene3D Peptidase S8/S53 domain 3 429 IPR036852 GO:0004252|GO:0006508
Trme1092g00001 567 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 6 563 IPR045051 -
Trme1092g00001 567 CDD PA_subtilisin_like 148 279 - -
Trme1092g00001 567 Gene3D - 142 286 - -
Trme1092g00001 567 PRINTS Subtilisin serine protease family (S8) signature 346 362 IPR015500 -
Trme1092g00001 567 PRINTS Subtilisin serine protease family (S8) signature 10 23 IPR015500 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1092g00001 Trme-Chr1092 2 2521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1092g00001 4 566 Subtilisin-like Serine Gene Family AT1G20150 52.715 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1092g00001 K25898 - gmx:100820194 834.328