Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109270g00001 ATGCAGCCTATTACTGAGAAGAGTGATGTTTACAGTTATGGTATGGTTCTACTTGAGGTCTTAACAGGAAGGCACCCTTTAGATCCAACTCTTCCAAGGGGTTCAAACATGGTTCAATGGGTTAGGAATCATTTATCTAGCAAAGGAGACCCTTCTGAAATTCTTGATACAAAGCTTAAAGGAAGGGCTGACCCTACCATGCATGAAATGCTACAAACTTTAGCAGTGTCATTTCTATGTGTAAGCACAAGAGCTGCTGACCGTCCAGCAATGAAAGATGTTGTTGCAATGCTCAAAGAAATTAAACCTGTTGAAACATCAAGAGGAGACACTGATGTACTGAAATTAGGAGGTTTAACATCACATAGTTCTCCACCACCTCCTAAGAATGTACTTGCACATGGATCATCTACTTGTTCCTATAATTTCTCAGATGGTTAA 441 0.3991 MQPITEKSDVYSYGMVLLEVLTGRHPLDPTLPRGSNMVQWVRNHLSSKGDPSEILDTKLKGRADPTMHEMLQTLAVSFLCVSTRAADRPAMKDVVAMLKEIKPVETSRGDTDVLKLGGLTSHSSPPPPKNVLAHGSSTCSYNFSDG 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109270g00001 146 MobiDBLite consensus disorder prediction 109 133 - -
Trme109270g00001 146 Gene3D Transferase(Phosphotransferase) domain 1 1 115 - -
Trme109270g00001 146 Pfam Protein tyrosine and serine/threonine kinase 4 97 IPR001245 GO:0004672|GO:0006468
Trme109270g00001 146 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 108 - -
Trme109270g00001 146 SUPERFAMILY Protein kinase-like (PK-like) 3 104 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme109270g00001 Trme-Chr109270 19 459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme109270g00001 1 145 Receptor kinase-like Gene Family AT5G56040 62.838 4.10e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme109270g00001 PK_Tyr_Ser-Thr 2.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109270g00001 - - psat:127084696 283.108