Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109263g00001 ATGGGAAGTTGCGTATCAACGCAAGGCAAAAGTGGCGGCGGACGAAAGAAATCAAAGGACAATCACAACAACAATAAACACAAAACCGATCAAAACATCGAGGCTACTACACCTACCGCGCGTAGATCAAGCGTGAGGGGCGGTCCACTAAACGTCGTATCCAATCCATGTCCTGGTAACATATTTGATAAATATGAATTAGGAAAAGAGCTTGGGAGAGGCGAATTTGGTGTGACGCACCGTTGCGTGGATCTTAAAACAGGCGAGGCGTTTGCGTGTAAGAAGATTTCAAAGACGAAACTTAGGACGGAGATTGATATTCAAGATGTGAGGAGAGAGGTTCAAATTATGAGGCATTTGCCTCAACATCCTAATATTGTTGCTTTTAGAGAAGCTTATGAAGATAGAGATGCTGTTTATCTTGTTATGGAATTGTGTGAAGGTGGTGAACTTTTTGATAGGATTGTTGCTAAAGGTCATTATACAGAAAGAGCTGCTGCTAATGTTGCCAAAACCATTCTTGAAGTTTGCAAGGTAATGTAG 543 0.418 MGSCVSTQGKSGGGRKKSKDNHNNNKHKTDQNIEATTPTARRSSVRGGPLNVVSNPCPGNIFDKYELGKELGRGEFGVTHRCVDLKTGEAFACKKISKTKLRTEIDIQDVRREVQIMRHLPQHPNIVAFREAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVM 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109263g00001 180 Gene3D Transferase(Phosphotransferase) domain 1 58 180 - -
Trme109263g00001 180 MobiDBLite consensus disorder prediction 13 29 - -
Trme109263g00001 180 Pfam Protein kinase domain 65 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme109263g00001 180 ProSiteProfiles Protein kinase domain profile. 65 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme109263g00001 180 FunFam Calcium-dependent protein kinase 1 67 150 - -
Trme109263g00001 180 PANTHER SERINE/THREONINE-PROTEIN KINASE 60 179 - -
Trme109263g00001 180 SUPERFAMILY Protein kinase-like (PK-like) 61 175 IPR011009 -
Trme109263g00001 180 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Trme109263g00001 180 MobiDBLite consensus disorder prediction 1 50 - -
Trme109263g00001 180 SMART serkin_6 65 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme109263g00001 180 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme109263g00001 Trme-Chr109263 18 560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme109263g00001 1 179 EF-hand Containing Proteins AT2G31500 60.221 2.23e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme109263g00001 Pkinase 1.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109263g00001 K13412 - gmx:100818929 259.61