Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10912g00001 ATGCAAATATTCATAAAGATGTTGGATCACAGGTGGTTCCCCCTGAGGGTTAAGAGTTCAGACATGATAGTTGATGTGAAGCAGAAGATTCTTGACAAGGAAGGGATCCCATGTAAAAATCAACGTCTGATCTTTGGCGGTAAGCAACCAGAAGACAATCAGACCCTTGCCGATTGCAACATCGAAGAGAAGTCAACCATCCATCTTGTATTTCGCTTCCCGTTCTACGTTATTAAGAGATAG 243 0.4239 MQIFIKMLDHRWFPLRVKSSDMIVDVKQKILDKEGIPCKNQRLIFGGKQPEDNQTLADCNIEEKSTIHLVFRFPFYVIKR 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10912g00001 80 PANTHER UBIQUITIN 1 73 - -
Trme10912g00001 80 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trme10912g00001 80 FunFam Polyubiquitin 9 1 74 - -
Trme10912g00001 80 Pfam Ubiquitin family 3 72 IPR000626 GO:0005515
Trme10912g00001 80 ProSiteProfiles Ubiquitin domain profile. 1 72 IPR000626 GO:0005515
Trme10912g00001 80 SMART ubq_7 1 72 IPR000626 GO:0005515
Trme10912g00001 80 Gene3D - 1 76 - -
Trme10912g00001 80 SUPERFAMILY Ubiquitin-like 1 74 IPR029071 -
Trme10912g00001 80 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trme10912g00001 80 PRINTS Ubiquitin signature 53 74 IPR019956 -
Trme10912g00001 80 PRINTS Ubiquitin signature 32 52 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10912g00001 Trme-Chr10912 674 916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10912g00001 1 79 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 56.962 2.41e-24 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10912g00001 - K08770 drg:H9K76_09960 88.1965