Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme109057g00001 | GGGAAATCCACAGTCGTTAGTTTGATAGAGAGATTCTATGATCCATCGGAGGGTGAAGTTCTCATTGATGGCATCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAAGAACCCGTTCTCTTTACTTGCAGCATTAAGGAGAATATTGCCTATGGCAAAGATGGTGCAACTGATGATGAAATCAGAGCTGCAGCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGAGGTCAAAAGCAAAGAGTAGCAATCGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAGAGAATTGTACAAGAGGCATTAGACAGAATAATGATAAACCGGACAACTATCGTTGTAGCTCACCGCTTAAGTACAATAAGAAAT | 489 | 0.4131 | GKSTVVSLIERFYDPSEGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDDEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTIVVAHRLSTIRN | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme109057g00001 | 163 | Pfam | ABC transporter | 1 | 128 | IPR003439 | GO:0005524 | |
| Trme109057g00001 | 163 | ProSitePatterns | ABC transporters family signature. | 100 | 114 | IPR017871 | GO:0005524|GO:0016887 | |
| Trme109057g00001 | 163 | PANTHER | ABC TRANSPORTER B FAMILY | 1 | 163 | IPR039421 | - | |
| Trme109057g00001 | 163 | FunFam | ABC transporter B family member 28 | 1 | 163 | - | - | |
| Trme109057g00001 | 163 | Gene3D | - | 1 | 163 | IPR027417 | - | |
| Trme109057g00001 | 163 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 163 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme109057g00001 | Trme-Chr109057 | 1 | 660 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme109057g00001 | 1 | 163 | Calmodulin-binding Proteins | AT2G36910 | 64.417 | 1.37e-64 | 211 |