Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme109026g00001 ATGGAGAGACTCGCTGCGTATTTTACGGACGCCCTCCAAACTTTACTATACGGCGCTGATACTGCGCACGGTACCACCACCAACAACCACCACAACAAACTTTGCTTACTCACTAGACCCCACCAAACAGACTTACTCTCGGCCTTTCAGCTTCTTCAAGACATGTCTCCTTACGTCAAGTTCGCTCACTTCACGGCTAATCAAGCCATCCTTGAAGCCGTTACTCATGATAGAAGAGTTCACATAGTTGACTATGATATCATGGAAGGGGCCCAGTGGGCTTCATTAATTCAATCACTTTCATCACATAAAGAAGGCCTGCCAGGCCCACATCTTCGCATCACTGCGTTGTCCAGAAACAAAGAACGTGGCAGTGGACGTAGATCAACCACTGCCACCGTTCAAGAAACTGGACGACGATTAACGTCGTTTGCAGCTTCCGTTGGACAACCGTTTACTTTTCATCAATGTAGGTTGGATTCAGACGAAACGTTTCAAACTTCTTCGTTGAAGCTTGTTCGTGGCGAGGCTTTGGTGTTTAACTGTGTGATGCATTTACCACATCTTAGTTACCGTGCCTCGGATTCTATAGCTTCGTTTTTCAATGGTGCGAAAGAATTGGGATCAAAACTTGTGACATTAGTT 645 0.4589 MERLAAYFTDALQTLLYGADTAHGTTTNNHHNKLCLLTRPHQTDLLSAFQLLQDMSPYVKFAHFTANQAILEAVTHDRRVHIVDYDIMEGAQWASLIQSLSSHKEGLPGPHLRITALSRNKERGSGRRSTTATVQETGRRLTSFAASVGQPFTFHQCRLDSDETFQTSSLKLVRGEALVFNCVMHLPHLSYRASDSIASFFNGAKELGSKLVTLV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme109026g00001 215 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 215 IPR005202 -
Trme109026g00001 215 ProSiteProfiles GRAS family profile. 1 215 IPR005202 -
Trme109026g00001 215 Pfam GRAS domain family 1 215 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme109026g00001 Trme-Chr109026 16 660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme109026g00001 2 215 GRAS Transcription Factor Family AT3G54220 34.884 2.28e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme109026g00001 GRAS 6e-54 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme109026g00001 - - cit:102620887 299.286