Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1089g00001 ATGGCTACCAATGAATCTTTGCTAGACAAGCCTAGAAAATCTATTCCCAAAACATTTTGGTTAATCCTCTCTTTAGTTGCTATCATAAGCTCATTAGCACTTATTGTTTCTCATCTAAACAAACCAATCTCCTTTCTTCACCTCTCCTCAGCTCCCAATCTATGTGAACATGCTCTTGATACAAAATCATGCTTAACTCATGTATCAGAAGTAATTCAAGGTGCAACTTTGGACAACACAAAAGACCAAAAATTGCATGTACTCTTGTCCATATTAACCAAGTCCACCACACATATGCAAAAAGCAATGAACACGGTCAACGCTATTAAACGCCGAATTAACAGTCCTATAGAAGAAATTGCTTTGAATGACTGTGAACAACTAATGGACTTGTCCATGGACAGAATTTGGGACTCGGTGTTCGCCATGACAAAAAGTAATATTGAGTCAGAGAAAGATGCACATACATGGTTAAGTAGTGTGCTCACTAATCATGCAACTTGCTTGGATGGATTAGAAGGCATATCTTTGAGCCTTATGGAAAGTGACATTCAAGACATGATATCAAGAGCTAGAACTTCTCTGGCTGTTTTTCTAGCTGTTTTTCCTCAAAAGGGTCGTGACGAATTCATTGATGAAAAATTGAATGGTGACTTTCCATCTTGGGTTACAAGCAATGGTAGGAGGCTTTTGGAGTCTTCTGTTGGAGACATAAAGGCAAATGTTGTTGTGGCAACTGATGGAAGTGGCAAGTTTAAGACTGTGGCTGAGGGTGTAGCATCTGCACCTGATAATGGTAAGACAACATATGTTATCTATGTGAAAAAGGGAACATACAAAGAGAATATTGAAATTGGTAAGAAAAAAACAAATGTGATGCTTGTTGGTGATGGTATGGATGCAACAATAATCACAGGCAACTTGAATTTCATTGATGGAACAACCACCTTCAAAAGTGCCACTGTTGCTGCGGTGGGGGATGGATTTATAGCACAAGACATTTGGTTCCAAAACACGGCAGGCCCAGAGAAGCACCAAGCAGTGGCTCTGCGCGTCGGCGCAGACCAATCTGTCATCAACCGTTGCCGCATTGACGCTTTTCAAGACACTCTATATGCACACTCCAACAGACAATTTTACCGTGACTCCGTAATTACAGGTACAATTGACTTCATCTTTGGAAACGCAGCTGTTGTGTTCCAGAAGTGCAAGTTAGTGTCCCGAAAGCCTCTATCCAACCAAAACAACATGTTCACGGCTCAAGGCCGAGAAGATCCAGCTCAAAACACAGGAACTTCAATTCAACAATGTGACCTAACACCAAGTGATGACCTTAAGCCTGTTGTTGGCTCCATCAAAACATTCCTTGGCCGCCCGTGGAAGAAATACTCCAGAACTGTTGTATTGCAATCATTTCTGGACAGCCACATTGACCCAACAGGATGGGCTGAATGGGATGCCGCAAGTAAGGACTTTTTGCAAACGTTGTACTACGGAGAGTACATGAACAATGGACCAGGTGCTGGTACCGGTAAGAGAGTGAACTGGCCAGGTTATCATATCATCACAAGCGCAACAGAGGCTAGCAAGTTTACAGTAGCACAGCTAATCCAAGGTAATGTTTGGTTGAAGAACTCAGGGGTGGCCTTCACTGAGGGATTGTAA 1665 0.4222 MATNESLLDKPRKSIPKTFWLILSLVAIISSLALIVSHLNKPISFLHLSSAPNLCEHALDTKSCLTHVSEVIQGATLDNTKDQKLHVLLSILTKSTTHMQKAMNTVNAIKRRINSPIEEIALNDCEQLMDLSMDRIWDSVFAMTKSNIESEKDAHTWLSSVLTNHATCLDGLEGISLSLMESDIQDMISRARTSLAVFLAVFPQKGRDEFIDEKLNGDFPSWVTSNGRRLLESSVGDIKANVVVATDGSGKFKTVAEGVASAPDNGKTTYVIYVKKGTYKENIEIGKKKTNVMLVGDGMDATIITGNLNFIDGTTTFKSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQKCKLVSRKPLSNQNNMFTAQGREDPAQNTGTSIQQCDLTPSDDLKPVVGSIKTFLGRPWKKYSRTVVLQSFLDSHIDPTGWAEWDAASKDFLQTLYYGEYMNNGPGAGTGKRVNWPGYHIITSATEASKFTVAQLIQGNVWLKNSGVAFTEGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1089g00001 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 203 IPR035513 -
Trme1089g00001 554 CDD PMEI-like_4 57 201 - -
Trme1089g00001 554 Gene3D - 235 554 IPR012334 -
Trme1089g00001 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 191 IPR035513 -
Trme1089g00001 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Trme1089g00001 554 NCBIfam pectinesterase inhibitor domain 23 184 IPR006501 GO:0004857
Trme1089g00001 554 Pfam Plant invertase/pectin methylesterase inhibitor 53 181 IPR006501 GO:0004857
Trme1089g00001 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Trme1089g00001 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Trme1089g00001 554 PANTHER PECTINESTERASE 29 544 - -
Trme1089g00001 554 SMART PMEI_2 46 197 IPR006501 GO:0004857
Trme1089g00001 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Trme1089g00001 554 FunFam Pectinesterase 235 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1089g00001 Trme-Chr1089 84 2484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1089g00001 3 554 Carbohydrate Esterase AT1G11580 55.124 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1089g00001 K01051 - gmx:100815836 860.136